Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 17 threads; openjdk version "11.0.25" 2024-10-15; /home/ddpanchenko/juicer/scripts/juicer.sh -g T2T_Astel_plm -p /home/ddpanchenko/hybrid_anopheles_human/data/genome/chrom.sizes -s none -z /home/ddpanchenko/hybrid_anopheles_human/data/genome/T2Thuman_AsteI2_plm_merged_ref.fa -D /home/ddpanchenko/juicer/ -t 17                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  789,374
 Normal Paired: 441,348 (55.91%)
 Chimeric Paired: 279,470 (35.40%)
 Chimeric Ambiguous: 64,522 (8.17%)
 Unmapped: 4,034 (0.51%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 720,818 (91.32%)
Unique Reads: 702,027 (88.93%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 18,791 (2.38%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 113,505 (14.38% / 16.17%)
Hi-C Contacts: 588,522 (74.56% / 83.83%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 7% - 79% - 7% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 63%
 Cis/all (FF and RR orient): 67.7%
Inter-chromosomal: 70,201  (8.89% / 10.00%)
Intra-chromosomal: 518,321  (65.66% / 73.83%)
Short Range (<20,000bp): 416,089  (52.71% / 59.27%)
Long Range (>20,000bp): 102,232  (12.95% / 14.56%)