Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 17 threads; openjdk version "11.0.25" 2024-10-15; /home/ddpanchenko/juicer/scripts/juicer.sh -g T2T_Astel_plm -p /home/ddpanchenko/hybrid_anopheles_human/data/genome/chrom.sizes -s none -z /home/ddpanchenko/hybrid_anopheles_human/data/genome/T2Thuman_AsteI2_plm_merged_ref.fa -D /home/ddpanchenko/juicer/ -t 17                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  937,164
 Normal Paired: 514,283 (54.88%)
 Chimeric Paired: 330,383 (35.25%)
 Chimeric Ambiguous: 81,244 (8.67%)
 Unmapped: 11,254 (1.20%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 844,666 (90.13%)
Unique Reads: 814,986 (86.96%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 29,680 (3.17%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 82,613 (8.82% / 10.14%)
Hi-C Contacts: 732,373 (78.15% / 89.86%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 8% - 77% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 60%
 Cis/all (FF and RR orient): 63.8%
Inter-chromosomal: 106,574  (11.37% / 13.08%)
Intra-chromosomal: 625,799  (66.78% / 76.79%)
Short Range (<20,000bp): 490,478  (52.34% / 60.18%)
Long Range (>20,000bp): 135,321  (14.44% / 16.60%)