Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 17 threads; openjdk version "11.0.25" 2024-10-15; /home/ddpanchenko/juicer/scripts/juicer.sh -g T2T_Astel_plm -p /home/ddpanchenko/hybrid_anopheles_human/data/genome/chrom.sizes -s none -z /home/ddpanchenko/hybrid_anopheles_human/data/genome/T2Thuman_AsteI2_plm_merged_ref.fa -D /home/ddpanchenko/juicer/ -t 17                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  937,164
 Normal Paired: 514,283 (54.88%)
 Chimeric Paired: 330,383 (35.25%)
 Chimeric Ambiguous: 81,244 (8.67%)
 Unmapped: 11,254 (1.20%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 844,666 (90.13%)
Unique Reads: 814,986 (86.96%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 29,680 (3.17%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 141,391 (15.09% / 17.35%)
Hi-C Contacts: 673,595 (71.88% / 82.65%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 7% - 78% - 7% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 62%
 Cis/all (FF and RR orient): 65.3%
Inter-chromosomal: 88,987  (9.50% / 10.92%)
Intra-chromosomal: 584,608  (62.38% / 71.73%)
Short Range (<20,000bp): 464,198  (49.53% / 56.96%)
Long Range (>20,000bp): 120,410  (12.85% / 14.77%)