Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 17 threads; openjdk version "11.0.25" 2024-10-15; /home/ddpanchenko/juicer/scripts/juicer.sh -g T2T_Astel_plm -p /home/ddpanchenko/hybrid_anopheles_human/data/genome/chrom.sizes -s none -z /home/ddpanchenko/hybrid_anopheles_human/data/genome/T2Thuman_AsteI2_plm_merged_ref.fa -D /home/ddpanchenko/juicer/ -t 17                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  798,545
 Normal Paired: 401,888 (50.33%)
 Chimeric Paired: 317,366 (39.74%)
 Chimeric Ambiguous: 71,293 (8.93%)
 Unmapped: 7,998 (1.00%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 719,254 (90.07%)
Unique Reads: 707,097 (88.55%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 12,157 (1.52%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 75,539 (9.46% / 10.68%)
Hi-C Contacts: 631,558 (79.09% / 89.32%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 9% - 73% - 9% - 9%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 56%
 Cis/all (FF and RR orient): 72.0%
Inter-chromosomal: 77,335  (9.68% / 10.94%)
Intra-chromosomal: 554,223  (69.40% / 78.38%)
Short Range (<20,000bp): 415,051  (51.98% / 58.70%)
Long Range (>20,000bp): 139,172  (17.43% / 19.68%)