Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 17 threads; openjdk version "11.0.24" 2024-07-16; /home/ddpanchenko/juicer/scripts/juicer.sh -g T2T_Astel_plm -p /home/ddpanchenko/hubrid_anopheles_human/data/genome/chrom.sizes -s none -z /home/ddpanchenko/hubrid_anopheles_human/data/genome/T2Thuman_AsteI2_plm_merged_ref.fa -D /home/ddpanchenko/juicer/ -t 17                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  58,061,758
 Normal Paired: 25,724,943 (44.31%)
 Chimeric Paired: 10,327,126 (17.79%)
 Chimeric Ambiguous: 4,802,915 (8.27%)
 Unmapped: 17,206,774 (29.64%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 36,052,069 (62.09%)
Unique Reads: 9,773,004 (16.83%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 26,279,065 (45.26%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,102,800 (7.07% / 41.98%)
Hi-C Contacts: 5,670,204 (9.77% / 58.02%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 12% - 67% - 11% - 11%
 Pair Type inter chrom %(L-I-O-R): 26% - 25% - 25% - 24%
 DE: 25%
 Cis/all (FF and RR orient): 27.9%
Inter-chromosomal: 3,043,337  (5.24% / 31.14%)
Intra-chromosomal: 2,626,867  (4.52% / 26.88%)
Short Range (<20,000bp): 1,751,540  (3.02% / 17.92%)
Long Range (>20,000bp): 875,327  (1.51% / 8.96%)