Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 17 threads; openjdk version "11.0.24" 2024-07-16; /home/ddpanchenko/juicer/scripts/juicer.sh -g T2T_Astel_plm -p /home/ddpanchenko/hubrid_anopheles_human/data/genome/chrom.sizes -s none -z /home/ddpanchenko/hubrid_anopheles_human/data/genome/T2Thuman_AsteI2_plm_merged_ref.fa -D /home/ddpanchenko/juicer/ -t 17 Sequenced Read Pairs: 58,061,758 Normal Paired: 25,724,943 (44.31%) Chimeric Paired: 10,327,126 (17.79%) Chimeric Ambiguous: 4,802,915 (8.27%) Unmapped: 17,206,774 (29.64%) Ligation Motif Present: 0 (0.00%) Alignable (Normal+Chimeric Paired): 36,052,069 (62.09%) Unique Reads: 9,773,004 (16.83%) PCR Duplicates: 0 (0.00%) Optical Duplicates: 26,279,065 (45.26%) Library Complexity Estimate: 0 Intra-fragment Reads: 0 (0.00% / 0.00%) Below MAPQ Threshold: 4,102,800 (7.07% / 41.98%) Hi-C Contacts: 5,670,204 (9.77% / 58.02%) Ligation Motif Present: 0 (0.00% / 0.00%) 3' Bias (Long Range): 0% - 0% Pair Type intra chrom %(L-I-O-R): 12% - 67% - 11% - 11% Pair Type inter chrom %(L-I-O-R): 26% - 25% - 25% - 24% DE: 25% Cis/all (FF and RR orient): 27.9% Inter-chromosomal: 3,043,337 (5.24% / 31.14%) Intra-chromosomal: 2,626,867 (4.52% / 26.88%) Short Range (<20,000bp): 1,751,540 (3.02% / 17.92%) Long Range (>20,000bp): 875,327 (1.51% / 8.96%)