Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 17 threads; openjdk version "11.0.24" 2024-07-16; /home/ddpanchenko/juicer/scripts/juicer.sh -g T2T_Astel_plm -p /home/ddpanchenko/hubrid_anopheles_human/data/genome/chrom.sizes -s none -z /home/ddpanchenko/hubrid_anopheles_human/data/genome/T2Thuman_AsteI2_plm_merged_ref.fa -D /home/ddpanchenko/juicer/ -t 17                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  5,470,229
 Normal Paired: 2,711,716 (49.57%)
 Chimeric Paired: 1,045,414 (19.11%)
 Chimeric Ambiguous: 743,591 (13.59%)
 Unmapped: 969,508 (17.72%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 3,757,130 (68.68%)
Unique Reads: 2,366,837 (43.27%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 1,390,293 (25.42%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 577,153 (10.55% / 24.38%)
Hi-C Contacts: 1,789,684 (32.72% / 75.62%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 10% - 71% - 9% - 10%
 Pair Type inter chrom %(L-I-O-R): 26% - 25% - 25% - 24%
 DE: 42%
 Cis/all (FF and RR orient): 44.6%
Inter-chromosomal: 573,949  (10.49% / 24.25%)
Intra-chromosomal: 1,215,735  (22.22% / 51.37%)
Short Range (<20,000bp): 892,279  (16.31% / 37.70%)
Long Range (>20,000bp): 323,456  (5.91% / 13.67%)