Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 17 threads; openjdk version "11.0.24" 2024-07-16; /home/ddpanchenko/juicer/scripts/juicer.sh -g T2T_Astel_plm -p /home/ddpanchenko/hubrid_anopheles_human/data/genome/chrom.sizes -s none -z /home/ddpanchenko/hubrid_anopheles_human/data/genome/T2Thuman_AsteI2_plm_merged_ref.fa -D /home/ddpanchenko/juicer/ -t 17 Sequenced Read Pairs: 5,470,229 Normal Paired: 2,711,716 (49.57%) Chimeric Paired: 1,045,414 (19.11%) Chimeric Ambiguous: 743,591 (13.59%) Unmapped: 969,508 (17.72%) Ligation Motif Present: 0 (0.00%) Alignable (Normal+Chimeric Paired): 3,757,130 (68.68%) Unique Reads: 2,366,837 (43.27%) PCR Duplicates: 0 (0.00%) Optical Duplicates: 1,390,293 (25.42%) Library Complexity Estimate: 0 Intra-fragment Reads: 0 (0.00% / 0.00%) Below MAPQ Threshold: 577,153 (10.55% / 24.38%) Hi-C Contacts: 1,789,684 (32.72% / 75.62%) Ligation Motif Present: 0 (0.00% / 0.00%) 3' Bias (Long Range): 0% - 0% Pair Type intra chrom %(L-I-O-R): 10% - 71% - 9% - 10% Pair Type inter chrom %(L-I-O-R): 26% - 25% - 25% - 24% DE: 42% Cis/all (FF and RR orient): 44.6% Inter-chromosomal: 573,949 (10.49% / 24.25%) Intra-chromosomal: 1,215,735 (22.22% / 51.37%) Short Range (<20,000bp): 892,279 (16.31% / 37.70%) Long Range (>20,000bp): 323,456 (5.91% / 13.67%)