Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 17 threads; openjdk version "11.0.24" 2024-07-16; /home/ddpanchenko/juicer/scripts/juicer.sh -g T2T_Astel_plm -s none -z /home/ddpanchenko/hubrid_anopheles_human/data/genome/T2Thuman_AsteI2_plm_merged_ref.fa -D /home/ddpanchenko/juicer/ -t 17                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  411,716
 Normal Paired: 241,680 (58.70%)
 Chimeric Paired: 106,311 (25.82%)
 Chimeric Ambiguous: 36,103 (8.77%)
 Unmapped: 27,622 (6.71%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 347,991 (84.52%)
Unique Reads: 312,994 (76.02%)
PCR Duplicates: 29,793 (7.24%)
Optical Duplicates: 5,204 (1.26%)
Library Complexity Estimate: 1,855,989
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 83,886 (20.37% / 26.80%)
Hi-C Contacts: 229,108 (55.65% / 73.20%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 5% - 84% - 5% - 5%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 70%
 Cis/all (FF and RR orient): 63.9%
Inter-chromosomal: 24,706  (6.00% / 7.89%)
Intra-chromosomal: 204,402  (49.65% / 65.31%)
Short Range (<20,000bp): 173,692  (42.19% / 55.49%)
Long Range (>20,000bp): 30,710  (7.46% / 9.81%)