Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 4 threads; openjdk version "11.0.24" 2024-07-16; /home/ddpanchenko/juicer/scripts/juicer.sh -g T2T_Astel_plm -p /home/ddpanchenko/hubrid_anopheles_human/data/genome/chrom.sizes -s none -z /home/ddpanchenko/hubrid_anopheles_human/data/genome/T2Thuman_AsteI2_plm_merged_ref.fa -D /home/ddpanchenko/juicer/ -t 4                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  29,577,994
 Normal Paired: 20,555,544 (69.50%)
 Chimeric Paired: 6,498,657 (21.97%)
 Chimeric Ambiguous: 2,330,770 (7.88%)
 Unmapped: 193,023 (0.65%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 27,054,201 (91.47%)
Unique Reads: 26,387,196 (89.21%)
PCR Duplicates: 667,005 (2.26%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 539,613,276
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 3,295,145 (11.14% / 12.49%)
Hi-C Contacts: 23,092,051 (78.07% / 87.51%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 10% - 69% - 10% - 10%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 48%
 Cis/all (FF and RR orient): 66.7%
Inter-chromosomal: 3,958,736  (13.38% / 15.00%)
Intra-chromosomal: 19,133,315  (64.69% / 72.51%)
Short Range (<20,000bp): 13,383,325  (45.25% / 50.72%)
Long Range (>20,000bp): 5,749,990  (19.44% / 21.79%)