Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 4 threads; openjdk version "11.0.24" 2024-07-16; /home/ddpanchenko/juicer/scripts/juicer.sh -g T2T_Astel_plm -p /home/ddpanchenko/hubrid_anopheles_human/data/genome/chrom.sizes -s none -z /home/ddpanchenko/hubrid_anopheles_human/data/genome/T2Thuman_AsteI2_plm_merged_ref.fa -D /home/ddpanchenko/juicer/ -t 4 Sequenced Read Pairs: 29,577,994 Normal Paired: 20,555,544 (69.50%) Chimeric Paired: 6,498,657 (21.97%) Chimeric Ambiguous: 2,330,770 (7.88%) Unmapped: 193,023 (0.65%) Ligation Motif Present: 0 (0.00%) Alignable (Normal+Chimeric Paired): 27,054,201 (91.47%) Unique Reads: 26,387,196 (89.21%) PCR Duplicates: 667,005 (2.26%) Optical Duplicates: 0 (0.00%) Library Complexity Estimate: 539,613,276 Intra-fragment Reads: 0 (0.00% / 0.00%) Below MAPQ Threshold: 5,322,805 (18.00% / 20.17%) Hi-C Contacts: 21,064,391 (71.22% / 79.83%) Ligation Motif Present: 0 (0.00% / 0.00%) 3' Bias (Long Range): 0% - 0% Pair Type intra chrom %(L-I-O-R): 10% - 70% - 10% - 10% Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25% DE: 50% Cis/all (FF and RR orient): 67.7% Inter-chromosomal: 3,421,627 (11.57% / 12.97%) Intra-chromosomal: 17,642,764 (59.65% / 66.86%) Short Range (<20,000bp): 12,454,209 (42.11% / 47.20%) Long Range (>20,000bp): 5,188,555 (17.54% / 19.66%)