Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 4 threads; openjdk version "11.0.24" 2024-07-16; /home/ddpanchenko/juicer/scripts/juicer.sh -g T2T_Astel_plm -p /home/ddpanchenko/hubrid_anopheles_human/data/genome/chrom.sizes -s none -z /home/ddpanchenko/hubrid_anopheles_human/data/genome/T2Thuman_AsteI2_plm_merged_ref.fa -D /home/ddpanchenko/juicer/ -t 4                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  22,259,795
 Normal Paired: 16,909,684 (75.97%)
 Chimeric Paired: 3,795,021 (17.05%)
 Chimeric Ambiguous: 1,451,353 (6.52%)
 Unmapped: 103,737 (0.47%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 20,704,705 (93.01%)
Unique Reads: 19,098,117 (85.80%)
PCR Duplicates: 1,606,588 (7.22%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 126,419,948
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 2,344,984 (10.53% / 12.28%)
Hi-C Contacts: 16,753,133 (75.26% / 87.72%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 11% - 68% - 11% - 11%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 46%
 Cis/all (FF and RR orient): 65.1%
Inter-chromosomal: 3,126,548  (14.05% / 16.37%)
Intra-chromosomal: 13,626,585  (61.22% / 71.35%)
Short Range (<20,000bp): 9,587,542  (43.07% / 50.20%)
Long Range (>20,000bp): 4,039,043  (18.15% / 21.15%)