Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 4 threads; openjdk version "11.0.24" 2024-07-16; /home/ddpanchenko/juicer/scripts/juicer.sh -g T2T_Astel_plm -p /home/ddpanchenko/hubrid_anopheles_human/data/genome/chrom.sizes -s none -z /home/ddpanchenko/hubrid_anopheles_human/data/genome/T2Thuman_AsteI2_plm_merged_ref.fa -D /home/ddpanchenko/juicer/ -t 4 Sequenced Read Pairs: 22,259,795 Normal Paired: 16,909,684 (75.97%) Chimeric Paired: 3,795,021 (17.05%) Chimeric Ambiguous: 1,451,353 (6.52%) Unmapped: 103,737 (0.47%) Ligation Motif Present: 0 (0.00%) Alignable (Normal+Chimeric Paired): 20,704,705 (93.01%) Unique Reads: 19,098,117 (85.80%) PCR Duplicates: 1,606,588 (7.22%) Optical Duplicates: 0 (0.00%) Library Complexity Estimate: 126,419,948 Intra-fragment Reads: 0 (0.00% / 0.00%) Below MAPQ Threshold: 2,344,984 (10.53% / 12.28%) Hi-C Contacts: 16,753,133 (75.26% / 87.72%) Ligation Motif Present: 0 (0.00% / 0.00%) 3' Bias (Long Range): 0% - 0% Pair Type intra chrom %(L-I-O-R): 11% - 68% - 11% - 11% Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25% DE: 46% Cis/all (FF and RR orient): 65.1% Inter-chromosomal: 3,126,548 (14.05% / 16.37%) Intra-chromosomal: 13,626,585 (61.22% / 71.35%) Short Range (<20,000bp): 9,587,542 (43.07% / 50.20%) Long Range (>20,000bp): 4,039,043 (18.15% / 21.15%)