Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 4 threads; openjdk version "11.0.24" 2024-07-16; /home/ddpanchenko/juicer/scripts/juicer.sh -g T2T_Astel_plm -p /home/ddpanchenko/hubrid_anopheles_human/data/genome/chrom.sizes -s none -z /home/ddpanchenko/hubrid_anopheles_human/data/genome/T2Thuman_AsteI2_plm_merged_ref.fa -D /home/ddpanchenko/juicer/ -t 4                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  22,259,795
 Normal Paired: 16,909,684 (75.97%)
 Chimeric Paired: 3,795,021 (17.05%)
 Chimeric Ambiguous: 1,451,353 (6.52%)
 Unmapped: 103,737 (0.47%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 20,704,705 (93.01%)
Unique Reads: 19,098,117 (85.80%)
PCR Duplicates: 1,606,588 (7.22%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 126,419,948
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 3,778,824 (16.98% / 19.79%)
Hi-C Contacts: 15,319,293 (68.82% / 80.21%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 11% - 69% - 10% - 11%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 48%
 Cis/all (FF and RR orient): 66.0%
Inter-chromosomal: 2,729,891  (12.26% / 14.29%)
Intra-chromosomal: 12,589,402  (56.56% / 65.92%)
Short Range (<20,000bp): 8,930,770  (40.12% / 46.76%)
Long Range (>20,000bp): 3,658,632  (16.44% / 19.16%)