Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 4 threads; openjdk version "11.0.24" 2024-07-16; /home/ddpanchenko/juicer/scripts/juicer.sh -g T2T_Astel_plm -p /home/ddpanchenko/hubrid_anopheles_human/data/genome/chrom.sizes -s none -z /home/ddpanchenko/hubrid_anopheles_human/data/genome/T2Thuman_AsteI2_plm_merged_ref.fa -D /home/ddpanchenko/juicer/ -t 4                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  18,200,049
 Normal Paired: 13,489,796 (74.12%)
 Chimeric Paired: 3,301,183 (18.14%)
 Chimeric Ambiguous: 1,287,622 (7.07%)
 Unmapped: 121,448 (0.67%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 16,790,979 (92.26%)
Unique Reads: 15,941,095 (87.59%)
PCR Duplicates: 849,884 (4.67%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 160,222,387
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 1,944,442 (10.68% / 12.20%)
Hi-C Contacts: 13,996,653 (76.90% / 87.80%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 11% - 68% - 11% - 11%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 46%
 Cis/all (FF and RR orient): 64.7%
Inter-chromosomal: 2,649,541  (14.56% / 16.62%)
Intra-chromosomal: 11,347,112  (62.35% / 71.18%)
Short Range (<20,000bp): 7,860,250  (43.19% / 49.31%)
Long Range (>20,000bp): 3,486,862  (19.16% / 21.87%)