Experiment description: Juicer version 1.6; BWA 0.7.18-r1243-dirty; 17 threads; openjdk version "11.0.24" 2024-07-16; /home/ddpanchenko/juicer/scripts/juicer.sh -g T2T_Astel_plm -p /home/ddpanchenko/hubrid_anopheles_human/data/genome/chrom.sizes -s none -z /home/ddpanchenko/hubrid_anopheles_human/data/genome/T2Thuman_AsteI2_plm_merged_ref.fa -D /home/ddpanchenko/juicer/ -t 17                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  55,351,510
 Normal Paired: 36,545,843 (66.03%)
 Chimeric Paired: 13,993,082 (25.28%)
 Chimeric Ambiguous: 4,580,661 (8.28%)
 Unmapped: 231,924 (0.42%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 50,538,925 (91.31%)
Unique Reads: 49,874,606 (90.11%)
PCR Duplicates: 664,319 (1.20%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 1,905,523,485
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 6,142,688 (11.10% / 12.32%)
Hi-C Contacts: 43,731,918 (79.01% / 87.68%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 12% - 64% - 12% - 12%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 44%
 Cis/all (FF and RR orient): 73.5%
Inter-chromosomal: 6,445,500  (11.64% / 12.92%)
Intra-chromosomal: 37,286,418  (67.36% / 74.76%)
Short Range (<20,000bp): 24,783,966  (44.78% / 49.69%)
Long Range (>20,000bp): 12,502,452  (22.59% / 25.07%)