Experiment description: Juicer version 1.5.6;9 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -d /mnt/storage/home/manuriddinov/Others/Varya/mESC_NSU_reads/mut_rep1_A1 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU -t 9 -o /mnt/storage/home/manuriddinov/Others/Varya/mESC_mut1 -n mESC_mut1 -q 30                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  318,767
 
Normal Paired: 249,247 (78.19%)
 
Chimeric Paired: 16,847 (5.29%)
 
Chimeric Ambiguous: 6,563 (2.06%)
 
Unmapped: 46,110 (14.47%)
 
Ligation Motif Present: 153,491 (48.15%)

Alignable (Normal+Chimeric Paired): 266,094 (83.48%)

Unique Reads: 265,889 (83.41%)

PCR Duplicates: 159 (0.05%)

Optical Duplicates: 46 (0.01%)

Library Complexity Estimate: 222,494,762

Intra-fragment Reads: 18,559 (5.82% / 6.98%)

Below MAPQ Threshold: 60,258 (18.90% / 22.66%)

Hi-C Contacts: 187,072 (58.69% / 70.36%)
 
Ligation Motif Present: 104,533  (32.79% / 39.31%)
 
3' Bias (Long Range): 75% - 25%
 
Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%

Inter-chromosomal: 21,569  (6.77% / 8.11%)

Intra-chromosomal: 165,503  (51.92% / 62.25%)

Short Range (<20Kb): 99,501  (31.21% / 37.42%)

Long Range (>20Kb): 66,000  (20.70% / 24.82%)