Experiment description: Juicer version 1.5.6;9 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -d /mnt/storage/home/manuriddinov/Others/Varya/mESC_NSU_reads/mut_rep1_A1 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU -t 9 -o /mnt/storage/home/manuriddinov/Others/Varya/mESC_mut1 -n mESC_mut1 -q 30                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  318,767
 
Normal Paired: 249,247 (78.19%)
 
Chimeric Paired: 16,847 (5.29%)
 
Chimeric Ambiguous: 6,563 (2.06%)
 
Unmapped: 46,110 (14.47%)
 
Ligation Motif Present: 153,491 (48.15%)

Alignable (Normal+Chimeric Paired): 266,094 (83.48%)

Unique Reads: 265,889 (83.41%)

PCR Duplicates: 159 (0.05%)

Optical Duplicates: 46 (0.01%)

Library Complexity Estimate: 222,494,762

Intra-fragment Reads: 18,559 (5.82% / 6.98%)

Below MAPQ Threshold: 77,125 (24.19% / 29.01%)

Hi-C Contacts: 170,205 (53.39% / 64.01%)
 
Ligation Motif Present: 96,099  (30.15% / 36.14%)
 
3' Bias (Long Range): 75% - 25%
 
Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%

Inter-chromosomal: 17,574  (5.51% / 6.61%)

Intra-chromosomal: 152,631  (47.88% / 57.40%)

Short Range (<20Kb): 93,102  (29.21% / 35.02%)

Long Range (>20Kb): 59,527  (18.67% / 22.39%)