Experiment description: Juicer version 1.5.6;9 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -d /mnt/storage/home/manuriddinov/Others/Varya/mESC_NSU_reads/mut_rep2_A8 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU -t 9 -o /mnt/storage/home/manuriddinov/Others/Varya/mESC_mut2 -n mESC_mut2 -q 30                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  356,597
 
Normal Paired: 267,020 (74.88%)
 
Chimeric Paired: 17,910 (5.02%)
 
Chimeric Ambiguous: 7,528 (2.11%)
 
Unmapped: 64,139 (17.99%)
 
Ligation Motif Present: 166,600 (46.72%)

Alignable (Normal+Chimeric Paired): 284,930 (79.90%)

Unique Reads: 284,721 (79.84%)

PCR Duplicates: 166 (0.05%)

Optical Duplicates: 43 (0.01%)

Library Complexity Estimate: 244,364,675

Intra-fragment Reads: 19,520 (5.47% / 6.86%)

Below MAPQ Threshold: 64,890 (18.20% / 22.79%)

Hi-C Contacts: 200,311 (56.17% / 70.35%)
 
Ligation Motif Present: 112,766  (31.62% / 39.61%)
 
3' Bias (Long Range): 74% - 26%
 
Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%

Inter-chromosomal: 20,886  (5.86% / 7.34%)

Intra-chromosomal: 179,425  (50.32% / 63.02%)

Short Range (<20Kb): 106,995  (30.00% / 37.58%)

Long Range (>20Kb): 72,430  (20.31% / 25.44%)