Experiment description: Juicer version 1.5.6;9 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -d /mnt/storage/home/manuriddinov/Others/Varya/mESC_NSU_reads/wt_rep2_A11 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU -t 9 -o /mnt/storage/home/manuriddinov/Others/Varya/mESC_wt_mut -n mESC_wt -q 30                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  645,552
 Normal Paired: 521,904 (80.85%)
 Chimeric Paired: 49,239 (7.63%)
 Chimeric Ambiguous: 20,871 (3.23%)
 Unmapped: 53,538 (8.29%)
 Ligation Motif Present: 353,788 (54.80%)
Alignable (Normal+Chimeric Paired): 571,143 (88.47%)
Unique Reads: 570,613 (88.39%)
PCR Duplicates: 451 (0.07%)
Optical Duplicates: 79 (0.01%)
Library Complexity Estimate: 361,355,176
Intra-fragment Reads: 29,509 (4.57% / 5.17%)
Below MAPQ Threshold: 136,790 (21.19% / 23.97%)
Hi-C Contacts: 404,314 (62.63% / 70.86%)
 Ligation Motif Present: 227,610  (35.26% / 39.89%)
 3' Bias (Long Range): 76% - 24%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 52,347  (8.11% / 9.17%)
Intra-chromosomal: 351,967  (54.52% / 61.68%)
Short Range (<20Kb): 176,879  (27.40% / 31.00%)
Long Range (>20Kb): 175,085  (27.12% / 30.68%)