Experiment description: Juicer version 1.5.6;9 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -d /mnt/storage/home/manuriddinov/Others/Varya/mESC_NSU_reads/wt_rep1_A10 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU -t 9 -o /mnt/storage/home/manuriddinov/Others/Varya/mESC_wt2 -n mESC_wt -q 30                                                                                                                                                                                                                                                                                                                                                                                                        
Sequenced Read Pairs:  710,130
 Normal Paired: 575,565 (81.05%)
 Chimeric Paired: 54,585 (7.69%)
 Chimeric Ambiguous: 22,177 (3.12%)
 Unmapped: 57,803 (8.14%)
 Ligation Motif Present: 379,129 (53.39%)
Alignable (Normal+Chimeric Paired): 630,150 (88.74%)
Unique Reads: 629,413 (88.63%)
PCR Duplicates: 613 (0.09%)
Optical Duplicates: 124 (0.02%)
Library Complexity Estimate: 323,552,404
Intra-fragment Reads: 35,008 (4.93% / 5.56%)
Below MAPQ Threshold: 149,147 (21.00% / 23.70%)
Hi-C Contacts: 445,258 (62.70% / 70.74%)
 Ligation Motif Present: 246,721  (34.74% / 39.20%)
 3' Bias (Long Range): 75% - 25%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 55,033  (7.75% / 8.74%)
Intra-chromosomal: 390,225  (54.95% / 62.00%)
Short Range (<20Kb): 194,665  (27.41% / 30.93%)
Long Range (>20Kb): 195,558  (27.54% / 31.07%)