Experiment description: Juicer version 1.5.6;9 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -z /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.fa -y /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.MboI.juicer.txt -p /mnt/storage/home/manuriddinov/MyData/Vertebrates/genome/mm10/mm10.chr.sizes -d /mnt/storage/home/manuriddinov/Others/Varya/mESC_NSU_reads/wt_rep1_A10 -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU -t 9 -o /mnt/storage/home/manuriddinov/Others/Varya/mESC_wt2 -n mESC_wt -q 30                                                                                                                                                                                                                                                                                                                                                                                                        
Sequenced Read Pairs:  710,130
 
Normal Paired: 575,565 (81.05%)
 
Chimeric Paired: 54,585 (7.69%)
 
Chimeric Ambiguous: 22,177 (3.12%)
 Unmapped: 57,803 (8.14%)
 
Ligation Motif Present: 379,129 (53.39%)

Alignable (Normal+Chimeric Paired): 630,150 (88.74%)

Unique Reads: 629,413 (88.63%)

PCR Duplicates: 613 (0.09%)

Optical Duplicates: 124 (0.02%)

Library Complexity Estimate: 323,552,404

Intra-fragment Reads: 35,008 (4.93% / 5.56%)

Below MAPQ Threshold: 191,402 (26.95% / 30.41%)

Hi-C Contacts: 403,003 (56.75% / 64.03%)
 
Ligation Motif Present: 225,672  (31.78% / 35.85%)
 
3' Bias (Long Range): 76% - 24%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%

Inter-chromosomal: 44,667  (6.29% / 7.10%)

Intra-chromosomal: 358,336  (50.46% / 56.93%)

Short Range (<20Kb): 181,509  (25.56% / 28.84%)

Long Range (>20Kb): 176,825  (24.90% / 28.09%)