Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.18" 2023-01-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /storage2/nyt/Projects/Juicer-Out/2023-03-29_Phil/FFPE/Лоп -s none -p /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.chrom.sizes -z /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
Sequenced Read Pairs:  6,952
 Normal Paired: 3,558 (51.18%)
 Chimeric Paired: 2,724 (39.18%)
 Chimeric Ambiguous: 620 (8.92%)
 Unmapped: 50 (0.72%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 6,282 (90.36%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-03-30T08:57:07,301]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 6,273 (90.23%)
PCR Duplicates: 6 (0.09%)
Optical Duplicates: 3 (0.04%)
Library Complexity Estimate: 3,283,393
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 538 (7.74% / 8.58%)
Hi-C Contacts: 5,735 (82.49% / 91.42%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 10% - 70% - 10% - 10%
 Pair Type inter chrom %(L-I-O-R): 24% - 24% - 27% - 24%
 DE: 56%
 Cis/all (FF and RR orient): 85.0%
Inter-chromosomal: 388  (5.58% / 6.19%)
Intra-chromosomal: 5,347  (76.91% / 85.24%)
Short Range (<20,000bp): 4,192  (60.30% / 66.83%)
Long Range (>20,000bp): 1,155  (16.61% / 18.41%)