Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 4 threads; openjdk version "17.0.8.1" 2023-08-24; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /storage3/nyt/Projects/Juicer-Out/2023-09-29_Kazan/FFPE/3 -s none -p /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -z /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 4                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  134,125
 Normal Paired: 125,510 (93.58%)
 Chimeric Paired: 3,457 (2.58%)
 Chimeric Ambiguous: 1,432 (1.07%)
 Unmapped: 3,726 (2.78%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 128,967 (96.15%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-10-02T14:45:42,666]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 120,637 (89.94%)
PCR Duplicates: 7,860 (5.86%)
Optical Duplicates: 470 (0.35%)
Library Complexity Estimate: 1,007,064
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 34,150 (25.46% / 28.31%)
Hi-C Contacts: 86,487 (64.48% / 71.69%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 9% - 74% - 9% - 9%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 60%
 Cis/all (FF and RR orient): 81.7%
Inter-chromosomal: 6,316  (4.71% / 5.24%)
Intra-chromosomal: 80,171  (59.77% / 66.46%)
Short Range (<20,000bp): 66,281  (49.42% / 54.94%)
Long Range (>20,000bp): 13,890  (10.36% / 11.51%)