Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.18" 2023-01-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /storage2/nyt/Projects/Juicer-Out/2023-03-14_Moscow/Tumors/B1 -s none -p /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -z /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
Sequenced Read Pairs:  445,546
 Normal Paired: 225,417 (50.59%)
 Chimeric Paired: 182,625 (40.99%)
 Chimeric Ambiguous: 35,325 (7.93%)
 Unmapped: 2,179 (0.49%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 408,042 (91.58%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-03-19T23:03:08,062]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 397,527 (89.22%)
PCR Duplicates: 10,496 (2.36%)
Optical Duplicates: 19 (0.00%)
Library Complexity Estimate: 7,794,173
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 53,301 (11.96% / 13.41%)
Hi-C Contacts: 344,226 (77.26% / 86.59%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 10% - 71% - 10% - 10%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 56%
 Cis/all (FF and RR orient): 80.8%
Inter-chromosomal: 29,245  (6.56% / 7.36%)
Intra-chromosomal: 314,981  (70.70% / 79.24%)
Short Range (<20,000bp): 245,038  (55.00% / 61.64%)
Long Range (>20,000bp): 69,943  (15.70% / 17.59%)