Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.18" 2023-01-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /storage2/nyt/Projects/Juicer-Out/2023-03-14_Moscow/Tumors/B2.1 -s none -p /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -z /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  452,168
 Normal Paired: 224,055 (49.55%)
 Chimeric Paired: 190,338 (42.09%)
 Chimeric Ambiguous: 35,972 (7.96%)
 Unmapped: 1,803 (0.40%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 414,393 (91.65%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-03-19T23:05:48,380]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 403,801 (89.30%)
PCR Duplicates: 10,553 (2.33%)
Optical Duplicates: 39 (0.01%)
Library Complexity Estimate: 7,995,905
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 52,588 (11.63% / 13.02%)
Hi-C Contacts: 351,213 (77.67% / 86.98%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 10% - 70% - 10% - 10%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 54%
 Cis/all (FF and RR orient): 81.6%
Inter-chromosomal: 29,719  (6.57% / 7.36%)
Intra-chromosomal: 321,494  (71.10% / 79.62%)
Short Range (<20,000bp): 245,722  (54.34% / 60.85%)
Long Range (>20,000bp): 75,772  (16.76% / 18.76%)