Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.18" 2023-01-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /storage2/nyt/Projects/Juicer-Out/2023-03-14_Moscow/Tumors/B2.1 -s none -p /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -z /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10 Sequenced Read Pairs: 452,168 Normal Paired: 224,055 (49.55%) Chimeric Paired: 190,338 (42.09%) Chimeric Ambiguous: 35,972 (7.96%) Unmapped: 1,803 (0.40%) Ligation Motif Present: 0 (0.00%) Alignable (Normal+Chimeric Paired): 414,393 (91.65%) WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2023-03-19T23:05:48,380] [Globals.java:138] [main] Development mode is enabled Unique Reads: 403,801 (89.30%) PCR Duplicates: 10,553 (2.33%) Optical Duplicates: 39 (0.01%) Library Complexity Estimate: 7,995,905 Intra-fragment Reads: 0 (0.00% / 0.00%) Below MAPQ Threshold: 52,588 (11.63% / 13.02%) Hi-C Contacts: 351,213 (77.67% / 86.98%) Ligation Motif Present: 0 (0.00% / 0.00%) 3' Bias (Long Range): 0% - 0% Pair Type intra chrom %(L-I-O-R): 10% - 70% - 10% - 10% Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25% DE: 54% Cis/all (FF and RR orient): 81.6% Inter-chromosomal: 29,719 (6.57% / 7.36%) Intra-chromosomal: 321,494 (71.10% / 79.62%) Short Range (<20,000bp): 245,722 (54.34% / 60.85%) Long Range (>20,000bp): 75,772 (16.76% / 18.76%)