Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.18" 2023-01-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /storage2/nyt/Projects/Juicer-Out/2023-03-14_Moscow/Tumors/B2.2 -s none -p /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -z /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  484,792
 Normal Paired: 226,178 (46.65%)
 Chimeric Paired: 217,590 (44.88%)
 Chimeric Ambiguous: 32,897 (6.79%)
 Unmapped: 8,127 (1.68%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 443,768 (91.54%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-03-19T23:09:09,705]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 431,813 (89.07%)
PCR Duplicates: 11,917 (2.46%)
Optical Duplicates: 38 (0.01%)
Library Complexity Estimate: 8,112,570
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 52,210 (10.77% / 12.09%)
Hi-C Contacts: 379,603 (78.30% / 87.91%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 11% - 67% - 11% - 11%
 Pair Type inter chrom %(L-I-O-R): 25% - 24% - 25% - 25%
 DE: 51%
 Cis/all (FF and RR orient): 82.1%
Inter-chromosomal: 32,930  (6.79% / 7.63%)
Intra-chromosomal: 346,673  (71.51% / 80.28%)
Short Range (<20,000bp): 259,654  (53.56% / 60.13%)
Long Range (>20,000bp): 87,019  (17.95% / 20.15%)