Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.17" 2022-10-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /storage2/nyt/Projects/Juicer-Out/2022-11-07_BGI_Moscow/Maria_stat/F10 -s none -p /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.chrom.sizes -z /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10 Sequenced Read Pairs: 109,705 Normal Paired: 75,395 (68.73%) Chimeric Paired: 26,330 (24.00%) Chimeric Ambiguous: 5,744 (5.24%) Unmapped: 2,236 (2.04%) Ligation Motif Present: 0 (0.00%) Alignable (Normal+Chimeric Paired): 101,725 (92.73%) WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2022-11-18T16:56:26,599] [Globals.java:138] [main] Development mode is enabled Unique Reads: 100,917 (91.99%) PCR Duplicates: 808 (0.74%) Optical Duplicates: 0 (0.00%) Library Complexity Estimate: 6,369,496 Intra-fragment Reads: 0 (0.00% / 0.00%) Below MAPQ Threshold: 17,813 (16.24% / 17.65%) Hi-C Contacts: 83,104 (75.75% / 82.35%) Ligation Motif Present: 0 (0.00% / 0.00%) 3' Bias (Long Range): 0% - 0% Pair Type intra chrom %(L-I-O-R): 7% - 80% - 7% - 7% Pair Type inter chrom %(L-I-O-R): 24% - 26% - 25% - 25% DE: 68% Cis/all (FF and RR orient): 79.8% Inter-chromosomal: 5,552 (5.06% / 5.50%) Intra-chromosomal: 77,552 (70.69% / 76.85%) Short Range (<20,000bp): 68,591 (62.52% / 67.97%) Long Range (>20,000bp): 8,961 (8.17% / 8.88%)