Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.17" 2022-10-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /storage2/nyt/Projects/Juicer-Out/2023-01-08_BGI/tn5-ffpe/F2_concatenated -s none -p /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.chrom.sizes -z /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
Sequenced Read Pairs:  9,383,165
 Normal Paired: 5,287,424 (56.35%)
 Chimeric Paired: 3,510,768 (37.42%)
 Chimeric Ambiguous: 520,698 (5.55%)
 Unmapped: 64,275 (0.69%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 8,798,192 (93.77%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-01-20T00:50:05,487]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 8,595,479 (91.61%)
PCR Duplicates: 202,713 (2.16%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 187,986,351
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 1,023,522 (10.91% / 11.91%)
Hi-C Contacts: 7,571,957 (80.70% / 88.09%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 9% - 74% - 9% - 9%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 61%
 Cis/all (FF and RR orient): 83.4%
Inter-chromosomal: 497,062  (5.30% / 5.78%)
Intra-chromosomal: 7,074,895  (75.40% / 82.31%)
Short Range (<20,000bp): 5,787,712  (61.68% / 67.33%)
Long Range (>20,000bp): 1,287,183  (13.72% / 14.98%)