Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.17" 2022-10-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /storage2/nyt/Projects/Juicer-Out/2022-12-15_Novogene/Maria/F6 -s none -p /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.chrom.sizes -z /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
Sequenced Read Pairs:  426,999
 Normal Paired: 300,744 (70.43%)
 Chimeric Paired: 93,131 (21.81%)
 Chimeric Ambiguous: 25,648 (6.01%)
 Unmapped: 7,476 (1.75%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 393,875 (92.24%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2022-12-15T16:59:58,303]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 318,754 (74.65%)
PCR Duplicates: 73,183 (17.14%)
Optical Duplicates: 1,938 (0.45%)
Library Complexity Estimate: 914,349
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 53,897 (12.62% / 16.91%)
Hi-C Contacts: 264,857 (62.03% / 83.09%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 4% - 87% - 4% - 4%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 24% - 25%
 DE: 78%
 Cis/all (FF and RR orient): 76.8%
Inter-chromosomal: 13,492  (3.16% / 4.23%)
Intra-chromosomal: 251,365  (58.87% / 78.86%)
Short Range (<20,000bp): 228,302  (53.47% / 71.62%)
Long Range (>20,000bp): 23,063  (5.40% / 7.24%)