Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.17" 2022-10-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /storage2/nyt/Projects/Juicer-Out/2022-11-07_BGI_Moscow/Maria_stat/F7 -s none -p /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.chrom.sizes -z /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10 Sequenced Read Pairs: 120,633 Normal Paired: 90,866 (75.32%) Chimeric Paired: 22,609 (18.74%) Chimeric Ambiguous: 5,485 (4.55%) Unmapped: 1,673 (1.39%) Ligation Motif Present: 0 (0.00%) Alignable (Normal+Chimeric Paired): 113,475 (94.07%) WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2022-11-18T16:59:15,681] [Globals.java:138] [main] Development mode is enabled Unique Reads: 112,565 (93.31%) PCR Duplicates: 910 (0.75%) Optical Duplicates: 0 (0.00%) Library Complexity Estimate: 7,037,165 Intra-fragment Reads: 0 (0.00% / 0.00%) Below MAPQ Threshold: 17,216 (14.27% / 15.29%) Hi-C Contacts: 95,349 (79.04% / 84.71%) Ligation Motif Present: 0 (0.00% / 0.00%) 3' Bias (Long Range): 0% - 0% Pair Type intra chrom %(L-I-O-R): 6% - 83% - 5% - 6% Pair Type inter chrom %(L-I-O-R): 25% - 24% - 25% - 25% DE: 73% Cis/all (FF and RR orient): 77.8% Inter-chromosomal: 5,745 (4.76% / 5.10%) Intra-chromosomal: 89,604 (74.28% / 79.60%) Short Range (<20,000bp): 79,295 (65.73% / 70.44%) Long Range (>20,000bp): 10,309 (8.55% / 9.16%)