Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.17" 2022-10-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /storage2/nyt/Projects/Juicer-Out/2022-11-07_BGI_Moscow/Maria_stat/K562-t1 -s none -p /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.chrom.sizes -z /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10 Sequenced Read Pairs: 93,545 Normal Paired: 76,609 (81.90%) Chimeric Paired: 6,571 (7.02%) Chimeric Ambiguous: 10,008 (10.70%) Unmapped: 357 (0.38%) Ligation Motif Present: 0 (0.00%) Alignable (Normal+Chimeric Paired): 83,180 (88.92%) WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2022-11-18T17:01:32,763] [Globals.java:138] [main] Development mode is enabled Unique Reads: 80,778 (86.35%) PCR Duplicates: 2,402 (2.57%) Optical Duplicates: 0 (0.00%) Library Complexity Estimate: 1,412,377 Intra-fragment Reads: 0 (0.00% / 0.00%) Below MAPQ Threshold: 57,918 (61.91% / 71.70%) Hi-C Contacts: 22,860 (24.44% / 28.30%) Ligation Motif Present: 0 (0.00% / 0.00%) 3' Bias (Long Range): 0% - 0% Pair Type intra chrom %(L-I-O-R): 4% - 88% - 4% - 4% Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25% DE: 58% Cis/all (FF and RR orient): 27.8% Inter-chromosomal: 6,859 (7.33% / 8.49%) Intra-chromosomal: 16,001 (17.11% / 19.81%) Short Range (<20,000bp): 14,250 (15.23% / 17.64%) Long Range (>20,000bp): 1,751 (1.87% / 2.17%)