Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.18" 2023-01-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /storage2/nyt/Projects/Juicer-Out/2023-03-14_Moscow/Tumors/M1 -s none -p /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -z /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
Sequenced Read Pairs:  462,479
 Normal Paired: 243,095 (52.56%)
 Chimeric Paired: 176,514 (38.17%)
 Chimeric Ambiguous: 40,664 (8.79%)
 Unmapped: 2,206 (0.48%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 419,609 (90.73%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-03-19T23:12:38,587]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 409,270 (88.49%)
PCR Duplicates: 10,317 (2.23%)
Optical Duplicates: 22 (0.00%)
Library Complexity Estimate: 8,391,748
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 57,316 (12.39% / 14.00%)
Hi-C Contacts: 351,954 (76.10% / 86.00%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 9% - 72% - 9% - 9%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 58%
 Cis/all (FF and RR orient): 80.1%
Inter-chromosomal: 29,720  (6.43% / 7.26%)
Intra-chromosomal: 322,234  (69.68% / 78.73%)
Short Range (<20,000bp): 254,140  (54.95% / 62.10%)
Long Range (>20,000bp): 68,094  (14.72% / 16.64%)