Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.18" 2023-01-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /storage2/nyt/Projects/Juicer-Out/2023-03-14_Moscow/Tumors/M2.1 -s none -p /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -z /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  421,919
 Normal Paired: 190,067 (45.05%)
 Chimeric Paired: 187,608 (44.47%)
 Chimeric Ambiguous: 42,733 (10.13%)
 Unmapped: 1,511 (0.36%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 377,675 (89.51%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-03-19T23:16:27,505]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 368,191 (87.27%)
PCR Duplicates: 9,447 (2.24%)
Optical Duplicates: 37 (0.01%)
Library Complexity Estimate: 7,421,511
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 52,717 (12.49% / 14.32%)
Hi-C Contacts: 315,474 (74.77% / 85.68%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 11% - 66% - 11% - 11%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 49%
 Cis/all (FF and RR orient): 80.8%
Inter-chromosomal: 30,648  (7.26% / 8.32%)
Intra-chromosomal: 284,826  (67.51% / 77.36%)
Short Range (<20,000bp): 209,333  (49.61% / 56.85%)
Long Range (>20,000bp): 75,493  (17.89% / 20.50%)