Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.18" 2023-01-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /storage2/nyt/Projects/Juicer-Out/2023-03-14_Moscow/Tumors/M2.2 -s none -p /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -z /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10 Sequenced Read Pairs: 464,336 Normal Paired: 211,253 (45.50%) Chimeric Paired: 209,666 (45.15%) Chimeric Ambiguous: 36,646 (7.89%) Unmapped: 6,771 (1.46%) Ligation Motif Present: 0 (0.00%) Alignable (Normal+Chimeric Paired): 420,919 (90.65%) WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2023-03-19T23:20:25,623] [Globals.java:138] [main] Development mode is enabled Unique Reads: 410,136 (88.33%) PCR Duplicates: 10,759 (2.32%) Optical Duplicates: 24 (0.01%) Library Complexity Estimate: 8,091,858 Intra-fragment Reads: 0 (0.00% / 0.00%) Below MAPQ Threshold: 52,250 (11.25% / 12.74%) Hi-C Contacts: 357,886 (77.07% / 87.26%) Ligation Motif Present: 0 (0.00% / 0.00%) 3' Bias (Long Range): 0% - 0% Pair Type intra chrom %(L-I-O-R): 11% - 66% - 11% - 11% Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25% DE: 49% Cis/all (FF and RR orient): 81.4% Inter-chromosomal: 33,485 (7.21% / 8.16%) Intra-chromosomal: 324,401 (69.86% / 79.10%) Short Range (<20,000bp): 237,149 (51.07% / 57.82%) Long Range (>20,000bp): 87,252 (18.79% / 21.27%)