Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.18" 2023-01-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /storage2/nyt/Projects/Juicer-Out/2023-03-14_Moscow/Tumors/M2.2 -s none -p /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -z /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  464,336
 Normal Paired: 211,253 (45.50%)
 Chimeric Paired: 209,666 (45.15%)
 Chimeric Ambiguous: 36,646 (7.89%)
 Unmapped: 6,771 (1.46%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 420,919 (90.65%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-03-19T23:20:25,623]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 410,136 (88.33%)
PCR Duplicates: 10,759 (2.32%)
Optical Duplicates: 24 (0.01%)
Library Complexity Estimate: 8,091,858
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 52,250 (11.25% / 12.74%)
Hi-C Contacts: 357,886 (77.07% / 87.26%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 11% - 66% - 11% - 11%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 49%
 Cis/all (FF and RR orient): 81.4%
Inter-chromosomal: 33,485  (7.21% / 8.16%)
Intra-chromosomal: 324,401  (69.86% / 79.10%)
Short Range (<20,000bp): 237,149  (51.07% / 57.82%)
Long Range (>20,000bp): 87,252  (18.79% / 21.27%)