Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 4 threads; openjdk version "17.0.8.1" 2023-08-24; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /storage3/nyt/Projects/Juicer-Out/2023-09-29_Kazan/FFPE/P166 -s none -p /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.chromsizes -z /storage2/nyt/Data/Genomes/T2T-CHM13v2.0/hgT2T.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 4                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
Sequenced Read Pairs:  313,631
 Normal Paired: 300,049 (95.67%)
 Chimeric Paired: 4,659 (1.49%)
 Chimeric Ambiguous: 2,028 (0.65%)
 Unmapped: 6,895 (2.20%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 304,708 (97.15%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-10-02T14:47:53,779]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 286,274 (91.28%)
PCR Duplicates: 17,365 (5.54%)
Optical Duplicates: 1,069 (0.34%)
Library Complexity Estimate: 2,552,460
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 75,244 (23.99% / 26.28%)
Hi-C Contacts: 211,030 (67.29% / 73.72%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 7% - 79% - 7% - 7%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 68%
 Cis/all (FF and RR orient): 82.8%
Inter-chromosomal: 11,633  (3.71% / 4.06%)
Intra-chromosomal: 199,397  (63.58% / 69.65%)
Short Range (<20,000bp): 168,786  (53.82% / 58.96%)
Long Range (>20,000bp): 30,611  (9.76% / 10.69%)