Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "17.0.8" 2023-07-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -d /storage2/artemS/toMasha/ffpe3 -s none -p /storage2/artemS/hg19/chromsizes/hg19.chrom.sizes -z /storage2/artemS/hg19/hg19.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  268,785
 Normal Paired: 254,631 (94.73%)
 Chimeric Paired: 9,922 (3.69%)
 Chimeric Ambiguous: 2,413 (0.90%)
 Unmapped: 1,819 (0.68%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 264,553 (98.43%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-08-17T16:30:04,444]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 225,893 (84.04%)
PCR Duplicates: 37,448 (13.93%)
Optical Duplicates: 1,212 (0.45%)
Library Complexity Estimate: 835,895
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 24,887 (9.26% / 11.02%)
Hi-C Contacts: 201,006 (74.78% / 88.98%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 0% - 99% - 0% - 0%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 97%
 Cis/all (FF and RR orient): 20.4%
Inter-chromosomal: 4,998  (1.86% / 2.21%)
Intra-chromosomal: 196,008  (72.92% / 86.77%)
Short Range (<20,000bp): 195,299  (72.66% / 86.46%)
Long Range (>20,000bp): 709  (0.26% / 0.31%)