Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "17.0.8" 2023-07-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -d /storage2/artemS/toMasha/ffpe7 -s none -p /storage2/artemS/hg19/chromsizes/hg19.chrom.sizes -z /storage2/artemS/hg19/hg19.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  305,640
 Normal Paired: 242,017 (79.18%)
 Chimeric Paired: 47,007 (15.38%)
 Chimeric Ambiguous: 14,777 (4.83%)
 Unmapped: 1,839 (0.60%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 289,024 (94.56%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-08-17T16:31:45,434]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 245,396 (80.29%)
PCR Duplicates: 42,245 (13.82%)
Optical Duplicates: 1,383 (0.45%)
Library Complexity Estimate: 880,824
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 34,290 (11.22% / 13.97%)
Hi-C Contacts: 211,106 (69.07% / 86.03%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 1% - 98% - 1% - 1%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 85%
 Cis/all (FF and RR orient): 15.8%
Inter-chromosomal: 27,344  (8.95% / 11.14%)
Intra-chromosomal: 183,762  (60.12% / 74.88%)
Short Range (<20,000bp): 179,937  (58.87% / 73.33%)
Long Range (>20,000bp): 3,825  (1.25% / 1.56%)