Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.18" 2023-01-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /storage2/nyt/Projects/Juicer-Out/2023-03-29_Phil/FFPE/sar6 -s none -p /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.chrom.sizes -z /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  3,670
 Normal Paired: 1,004 (27.36%)
 Chimeric Paired: 616 (16.78%)
 Chimeric Ambiguous: 102 (2.78%)
 Unmapped: 1,948 (53.08%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 1,620 (44.14%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-03-30T08:53:39,155]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 1,615 (44.01%)
PCR Duplicates: 2 (0.05%)
Optical Duplicates: 3 (0.08%)
Library Complexity Estimate: 653,133
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 219 (5.97% / 13.56%)
Hi-C Contacts: 1,396 (38.04% / 86.44%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 7% - 76% - 8% - 8%
 Pair Type inter chrom %(L-I-O-R): 24% - 28% - 26% - 21%
 DE: 63%
 Cis/all (FF and RR orient): 77.9%
Inter-chromosomal: 123  (3.35% / 7.62%)
Intra-chromosomal: 1,273  (34.69% / 78.82%)
Short Range (<20,000bp): 1,030  (28.07% / 63.78%)
Long Range (>20,000bp): 243  (6.62% / 15.05%)