FastContext Analysis Report

Run Data

R1/storage2/nyt/Projects/Juicer-Out/2022-11-07_BGI_Moscow/Maria_stat/t12/fastq/t12_R1.fastq.gz
R2/storage2/nyt/Projects/Juicer-Out/2022-11-07_BGI_Moscow/Maria_stat/t12/fastq/t12_R2.fastq.gz
Read TypePaired-end
Max Reads1,000,000
Rate Floor0.001

Performance

Reads Analyzed82,291
Threads16
Started2022-12-09T07:36:55.976841
Finished2022-12-09T07:37:05.242206

Patterns

Patterns List

#Pattern NameForward StrandReverse StrandLength [bp]
1A7GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTAGATCGGAAGAGCACACGTCTGAACTCCAGTCAC34
2A5ACACTCTTTCCCTACACGACGCTCTTCCGATCTAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT33
3P5AATGATACGGCGACCACCGAGATCTACACGTGTAGATCTCGGTGGTCGCCGTATCATT29
4P7CAAGCAGAAGACGGCATACGAGATATCTCGTATGCCGTCTTCTGCTTG24
5MECTGTCTCTTATACACATCTAGATGTGTATAAGAGACAG19
6B_CCGAGCCCACGAGACGTCTCGTGGGCTCGG15
7A_TCGTCGGCAGCGTCGACGCTGCCGACGA14

Patterns Analysis

-A7A5P5P7MEB_A_
A7goodgoodgoodgoodgoodgoodgood
A5-goodgoodgoodgoodgoodgood
P5--goodgoodgoodgoodgood
P7---goodgoodgoodgood
ME----goodgoodgood
B_-----goodgood
A_------good

Other

Unrecognized Sequenceunknown
K-mer Max Size15

Summary

R1

CountPercentageRead Structure
49,32359.937{unknown}
11,21313.626{B_:R}--{ME:R}--{unknown}
8,2259.995{kmer:13bp}--{ME:R}--{unknown}
2,5523.101{unknown}--{ME:R}--{unknown}
1,8692.271{kmer:10bp}--{ME:R}--{unknown}
7410.900{B_:R}--{unknown}
7280.885{kmer:14bp}--{ME:R}--{unknown}
5720.695{kmer:12bp}--{ME:R}--{unknown}
4980.605{unknown}--{B_:R}--{ME:R}--{unknown}
4680.569{kmer:11bp}--{ME:R}--{unknown}
3480.423{kmer:5bp}--{ME:R}--{unknown}
2830.344{kmer:7bp}--{ME:R}--{unknown}
2770.337{kmer:9bp}--{ME:R}--{unknown}
2340.284{kmer:3bp}--{ME:R}--{unknown}
2320.282{unknown}--{B_:R}--{unknown}
2160.262{unknown}--{ME:F}--{unknown}
2110.256{kmer:8bp}--{ME:R}--{unknown}
1770.215{kmer:6bp}--{ME:R}--{unknown}
1450.176{unknown}--{ME:F}--{A_:R}--{unknown}
1450.176{kmer:4bp}--{ME:R}--{unknown}
970.118{kmer:2bp}--{ME:R}--{unknown}
940.114{kmer:1bp}--{ME:R}--{unknown}
850.103{kmer:1bp}--{B_:R}--{ME:R}--{unknown}

R2

CountPercentageRead Structure
63,78777.514{unknown}
1,7472.123{unknown}--{ME:F}--{unknown}
1,3481.638{kmer:12bp}--{ME:R}--{unknown}
1,3171.600{kmer:13bp}--{ME:R}--{unknown}
8251.003{unknown}--{ME:F}--{B_:F}--{unknown}
8210.998{unknown}--{B_:F}--{unknown}
5040.612{unknown}--{A_:F}--{ME:R}--{unknown}
4460.542{kmer:5bp}--{B_:F}--{unknown}
3520.428{kmer:10bp}--{ME:R}--{unknown}
3410.414{kmer:13bp}--{B_:F}--{unknown}
3020.367{A_:F}--{ME:R}--{unknown}
2990.363{kmer:7bp}--{B_:F}--{unknown}
2910.354{kmer:2bp}--{B_:F}--{unknown}
2910.354{unknown}--{ME:R}--{unknown}
2080.253{kmer:10bp}--{B_:F}--{unknown}
1970.239{unknown}--{A_:R}--{unknown}
1670.203{kmer:9bp}--{ME:R}--{unknown}
1570.191{kmer:11bp}--{ME:F}--{B_:F}--{unknown}
1540.187{kmer:2bp}--{A_:R}--{unknown}
1520.185{kmer:4bp}--{B_:F}--{unknown}
1470.179{kmer:12bp}--{ME:F}--{B_:F}--{unknown}
1340.163{unknown}--{A_:F}--{unknown}
1280.156{kmer:5bp}--{ME:R}--{unknown}
1270.154{kmer:10bp}--{ME:F}--{B_:F}--{unknown}
1260.153{kmer:7bp}--{ME:F}--{B_:F}--{unknown}
1260.153{kmer:9bp}--{B_:F}--{unknown}
1240.151{kmer:1bp}--{ME:F}--{B_:F}--{unknown}
1170.142{ME:F}--{B_:F}--{unknown}
1160.141{kmer:9bp}--{ME:F}--{B_:F}--{unknown}
1070.130{kmer:13bp}--{ME:F}--{B_:F}--{unknown}
1050.128{kmer:4bp}--{ME:F}--{B_:F}--{unknown}
1020.124{kmer:3bp}--{B_:F}--{unknown}
990.120{kmer:8bp}--{ME:F}--{B_:F}--{unknown}
980.119{kmer:5bp}--{B_:F}--{A_:F}--{ME:R}--{unknown}
960.117{kmer:8bp}--{B_:F}--{unknown}
950.115{unknown}--{B_:F}--{A_:F}--{ME:R}--{unknown}
870.106{kmer:11bp}--{B_:F}--{unknown}
860.105{kmer:11bp}--{ME:R}--{unknown}
840.102{kmer:5bp}--{ME:F}--{B_:F}--{unknown}