FastContext Analysis Report

Run Data

R1	/storage2/nyt/Projects/Juicer-Out/2022-11-07_BGI_Moscow/Maria_stat/t12/fastq/t12_R1.fastq.gz
R2	/storage2/nyt/Projects/Juicer-Out/2022-11-07_BGI_Moscow/Maria_stat/t12/fastq/t12_R2.fastq.gz
Read Type	Paired-end
Max Reads	1,000,000
Rate Floor	0.001

Performance

Reads Analyzed	82,291
Threads	16
Started	2022-12-09T07:36:55.976841
Finished	2022-12-09T07:37:05.242206

Patterns

Patterns List

#	Pattern Name	Forward Strand	Reverse Strand	Length [bp]
1	A7	GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT	AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC	34
2	A5	ACACTCTTTCCCTACACGACGCTCTTCCGATCT	AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT	33
3	P5	AATGATACGGCGACCACCGAGATCTACAC	GTGTAGATCTCGGTGGTCGCCGTATCATT	29
4	P7	CAAGCAGAAGACGGCATACGAGAT	ATCTCGTATGCCGTCTTCTGCTTG	24
5	ME	CTGTCTCTTATACACATCT	AGATGTGTATAAGAGACAG	19
6	B_	CCGAGCCCACGAGAC	GTCTCGTGGGCTCGG	15
7	A_	TCGTCGGCAGCGTC	GACGCTGCCGACGA	14

Patterns Analysis

-	A7	A5	P5	P7	ME	B_	A_
A7	good	good	good	good	good	good	good
A5	-	good	good	good	good	good	good
P5	-	-	good	good	good	good	good
P7	-	-	-	good	good	good	good
ME	-	-	-	-	good	good	good
B_	-	-	-	-	-	good	good
A_	-	-	-	-	-	-	good

Other

Unrecognized Sequence	unknown
K-mer Max Size	15

Summary

R1

Count	Percentage	Read Structure
49,323	59.937	{unknown}
11,213	13.626	{B_:R}--{ME:R}--{unknown}
8,225	9.995	{kmer:13bp}--{ME:R}--{unknown}
2,552	3.101	{unknown}--{ME:R}--{unknown}
1,869	2.271	{kmer:10bp}--{ME:R}--{unknown}
741	0.900	{B_:R}--{unknown}
728	0.885	{kmer:14bp}--{ME:R}--{unknown}
572	0.695	{kmer:12bp}--{ME:R}--{unknown}
498	0.605	{unknown}--{B_:R}--{ME:R}--{unknown}
468	0.569	{kmer:11bp}--{ME:R}--{unknown}
348	0.423	{kmer:5bp}--{ME:R}--{unknown}
283	0.344	{kmer:7bp}--{ME:R}--{unknown}
277	0.337	{kmer:9bp}--{ME:R}--{unknown}
234	0.284	{kmer:3bp}--{ME:R}--{unknown}
232	0.282	{unknown}--{B_:R}--{unknown}
216	0.262	{unknown}--{ME:F}--{unknown}
211	0.256	{kmer:8bp}--{ME:R}--{unknown}
177	0.215	{kmer:6bp}--{ME:R}--{unknown}
145	0.176	{unknown}--{ME:F}--{A_:R}--{unknown}
145	0.176	{kmer:4bp}--{ME:R}--{unknown}
97	0.118	{kmer:2bp}--{ME:R}--{unknown}
94	0.114	{kmer:1bp}--{ME:R}--{unknown}
85	0.103	{kmer:1bp}--{B_:R}--{ME:R}--{unknown}

R2

Count	Percentage	Read Structure
63,787	77.514	{unknown}
1,747	2.123	{unknown}--{ME:F}--{unknown}
1,348	1.638	{kmer:12bp}--{ME:R}--{unknown}
1,317	1.600	{kmer:13bp}--{ME:R}--{unknown}
825	1.003	{unknown}--{ME:F}--{B_:F}--{unknown}
821	0.998	{unknown}--{B_:F}--{unknown}
504	0.612	{unknown}--{A_:F}--{ME:R}--{unknown}
446	0.542	{kmer:5bp}--{B_:F}--{unknown}
352	0.428	{kmer:10bp}--{ME:R}--{unknown}
341	0.414	{kmer:13bp}--{B_:F}--{unknown}
302	0.367	{A_:F}--{ME:R}--{unknown}
299	0.363	{kmer:7bp}--{B_:F}--{unknown}
291	0.354	{kmer:2bp}--{B_:F}--{unknown}
291	0.354	{unknown}--{ME:R}--{unknown}
208	0.253	{kmer:10bp}--{B_:F}--{unknown}
197	0.239	{unknown}--{A_:R}--{unknown}
167	0.203	{kmer:9bp}--{ME:R}--{unknown}
157	0.191	{kmer:11bp}--{ME:F}--{B_:F}--{unknown}
154	0.187	{kmer:2bp}--{A_:R}--{unknown}
152	0.185	{kmer:4bp}--{B_:F}--{unknown}
147	0.179	{kmer:12bp}--{ME:F}--{B_:F}--{unknown}
134	0.163	{unknown}--{A_:F}--{unknown}
128	0.156	{kmer:5bp}--{ME:R}--{unknown}
127	0.154	{kmer:10bp}--{ME:F}--{B_:F}--{unknown}
126	0.153	{kmer:7bp}--{ME:F}--{B_:F}--{unknown}
126	0.153	{kmer:9bp}--{B_:F}--{unknown}
124	0.151	{kmer:1bp}--{ME:F}--{B_:F}--{unknown}
117	0.142	{ME:F}--{B_:F}--{unknown}
116	0.141	{kmer:9bp}--{ME:F}--{B_:F}--{unknown}
107	0.130	{kmer:13bp}--{ME:F}--{B_:F}--{unknown}
105	0.128	{kmer:4bp}--{ME:F}--{B_:F}--{unknown}
102	0.124	{kmer:3bp}--{B_:F}--{unknown}
99	0.120	{kmer:8bp}--{ME:F}--{B_:F}--{unknown}
98	0.119	{kmer:5bp}--{B_:F}--{A_:F}--{ME:R}--{unknown}
96	0.117	{kmer:8bp}--{B_:F}--{unknown}
95	0.115	{unknown}--{B_:F}--{A_:F}--{ME:R}--{unknown}
87	0.106	{kmer:11bp}--{B_:F}--{unknown}
86	0.105	{kmer:11bp}--{ME:R}--{unknown}
84	0.102	{kmer:5bp}--{ME:F}--{B_:F}--{unknown}