FastContext Analysis Report

Run Data

R1	/storage2/nyt/Projects/Juicer-Out/2022-11-07_BGI_Moscow/Maria_stat/t15/fastq/t15_R1.fastq.gz
R2	/storage2/nyt/Projects/Juicer-Out/2022-11-07_BGI_Moscow/Maria_stat/t15/fastq/t15_R2.fastq.gz
Read Type	Paired-end
Max Reads	1,000,000
Rate Floor	0.001

Performance

Reads Analyzed	30,329
Threads	16
Started	2022-12-09T07:37:05.713959
Finished	2022-12-09T07:37:09.101504

Patterns

Patterns List

#	Pattern Name	Forward Strand	Reverse Strand	Length [bp]
1	A7	GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT	AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC	34
2	A5	ACACTCTTTCCCTACACGACGCTCTTCCGATCT	AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT	33
3	P5	AATGATACGGCGACCACCGAGATCTACAC	GTGTAGATCTCGGTGGTCGCCGTATCATT	29
4	P7	CAAGCAGAAGACGGCATACGAGAT	ATCTCGTATGCCGTCTTCTGCTTG	24
5	ME	CTGTCTCTTATACACATCT	AGATGTGTATAAGAGACAG	19
6	B_	CCGAGCCCACGAGAC	GTCTCGTGGGCTCGG	15
7	A_	TCGTCGGCAGCGTC	GACGCTGCCGACGA	14

Patterns Analysis

-	A7	A5	P5	P7	ME	B_	A_
A7	good	good	good	good	good	good	good
A5	-	good	good	good	good	good	good
P5	-	-	good	good	good	good	good
P7	-	-	-	good	good	good	good
ME	-	-	-	-	good	good	good
B_	-	-	-	-	-	good	good
A_	-	-	-	-	-	-	good

Other

Unrecognized Sequence	unknown
K-mer Max Size	15

Summary

R1

Count	Percentage	Read Structure
13,994	46.141	{unknown}
5,434	17.917	{B_:R}--{ME:R}--{unknown}
2,626	8.658	{kmer:13bp}--{ME:R}--{unknown}
1,550	5.111	{unknown}--{ME:R}--{unknown}
480	1.583	{unknown}--{B_:R}--{ME:R}--{unknown}
362	1.194	{kmer:14bp}--{ME:R}--{unknown}
281	0.927	{unknown}--{ME:F}--{A_:R}--{unknown}
263	0.867	{B_:R}--{unknown}
216	0.712	{unknown}--{A_:R}--{unknown}
197	0.650	{kmer:10bp}--{ME:R}--{unknown}
193	0.636	{unknown}--{ME:F}--{unknown}
189	0.623	{unknown}--{A_:R}--{B_:R}--{ME:R}--{unknown}
137	0.452	{kmer:12bp}--{ME:R}--{unknown}
103	0.340	{kmer:11bp}--{ME:R}--{unknown}
97	0.320	{unknown}--{B_:R}--{unknown}
92	0.303	{kmer:7bp}--{ME:R}--{unknown}
91	0.300	{kmer:5bp}--{ME:R}--{unknown}
84	0.277	{ME:F}--{A_:R}--{B_:R}--{ME:R}--{unknown}
82	0.270	{ME:F}--{A_:R}--{unknown}
71	0.234	{kmer:6bp}--{ME:R}--{unknown}
70	0.231	{kmer:10bp}--{B_:R}--{ME:R}--{unknown}
58	0.191	{kmer:8bp}--{ME:R}--{unknown}
55	0.181	{kmer:3bp}--{ME:R}--{unknown}
54	0.178	{kmer:4bp}--{ME:R}--{unknown}
53	0.175	{kmer:9bp}--{B_:R}--{ME:R}--{unknown}
53	0.175	{kmer:11bp}--{B_:R}--{ME:R}--{unknown}
43	0.142	{unknown}--{ME:F}--{A_:R}--{B_:R}--{unknown}
42	0.138	{kmer:9bp}--{ME:R}--{unknown}
42	0.138	{unknown}--{ME:F}--{kmer:12bp}
40	0.132	{unknown}--{B_:F}--{unknown}
38	0.125	{kmer:8bp}--{B_:R}--{ME:R}--{unknown}
38	0.125	{kmer:1bp}--{ME:R}--{unknown}
38	0.125	{kmer:13bp}--{B_:R}--{ME:R}--{unknown}
37	0.122	{kmer:13bp}--{A_:R}--{B_:R}--{ME:R}--{unknown}
35	0.115	{kmer:13bp}--{A_:R}--{unknown}
35	0.115	{kmer:5bp}--{B_:R}--{ME:R}--{unknown}
35	0.115	{unknown}--{ME:F}--{kmer:6bp}
34	0.112	{kmer:7bp}--{A_:R}--{B_:R}--{ME:R}--{unknown}
33	0.109	{kmer:7bp}--{B_:R}--{ME:R}--{unknown}
32	0.106	{unknown}--{ME:F}--{kmer:8bp}
32	0.106	{unknown}--{ME:F}
32	0.106	{kmer:6bp}--{B_:R}--{ME:R}--{unknown}
31	0.102	{unknown}--{ME:F}--{A_:R}--{kmer:5bp}
31	0.102	{unknown}--{A_:R}--{unknown}--{ME:R}--{unknown}

R2

Count	Percentage	Read Structure
19,661	64.826	{unknown}
1,475	4.863	{kmer:13bp}--{ME:R}--{unknown}
742	2.447	{A_:F}--{ME:R}--{unknown}
674	2.222	{kmer:12bp}--{ME:R}--{unknown}
628	2.071	{unknown}--{ME:F}--{unknown}
444	1.464	{unknown}--{A_:F}--{ME:R}--{unknown}
342	1.128	{unknown}--{ME:R}--{unknown}
336	1.108	{unknown}--{ME:F}--{B_:F}--{unknown}
260	0.857	{unknown}--{B_:F}--{unknown}
160	0.528	{unknown}--{A_:F}--{unknown}
156	0.514	{unknown}--{B_:F}--{A_:F}--{ME:R}--{unknown}
136	0.448	{kmer:9bp}--{ME:R}--{unknown}
132	0.435	{kmer:5bp}--{ME:R}--{unknown}
127	0.419	{kmer:6bp}--{ME:R}--{unknown}
124	0.409	{kmer:7bp}--{ME:R}--{unknown}
124	0.409	{kmer:10bp}--{ME:R}--{unknown}
105	0.346	{kmer:14bp}--{ME:R}--{unknown}
99	0.326	{kmer:11bp}--{A_:F}--{ME:R}--{unknown}
98	0.323	{kmer:3bp}--{ME:R}--{unknown}
90	0.297	{kmer:8bp}--{ME:R}--{unknown}
89	0.293	{kmer:9bp}--{A_:F}--{ME:R}--{unknown}
85	0.280	{ME:F}--{B_:F}--{unknown}
78	0.257	{kmer:4bp}--{ME:R}--{unknown}
73	0.241	{unknown}--{ME:F}--{B_:F}--{A_:F}--{unknown}
69	0.228	{kmer:10bp}--{A_:F}--{ME:R}--{unknown}
65	0.214	{unknown}--{A_:R}--{unknown}
64	0.211	{kmer:6bp}--{A_:F}--{ME:R}--{unknown}
60	0.198	{kmer:8bp}--{A_:F}--{ME:R}--{unknown}
56	0.185	{kmer:1bp}--{ME:R}--{unknown}
54	0.178	{ME:F}--{B_:F}--{A_:F}--{ME:R}--{unknown}
54	0.178	{kmer:7bp}--{B_:F}--{unknown}
53	0.175	{kmer:7bp}--{B_:F}--{A_:F}--{ME:R}--{unknown}
53	0.175	{kmer:7bp}--{A_:F}--{ME:R}--{unknown}
52	0.171	{kmer:2bp}--{B_:F}--{unknown}
50	0.165	{kmer:11bp}--{ME:R}--{unknown}
49	0.162	{unknown}--{B_:F}--{A_:F}--{unknown}
48	0.158	{kmer:13bp}--{B_:F}--{unknown}
48	0.158	{kmer:12bp}--{A_:F}--{ME:R}--{unknown}
47	0.155	{ME:F}--{unknown}
46	0.152	{kmer:1bp}--{A_:F}--{ME:R}--{unknown}
43	0.142	{kmer:5bp}--{B_:F}--{A_:F}--{ME:R}--{unknown}
42	0.138	{kmer:7bp}--{A_:R}--{unknown}
42	0.138	{kmer:14bp}--{A_:F}--{ME:R}--{unknown}
42	0.138	{kmer:13bp}--{A_:F}--{ME:R}--{unknown}
39	0.129	{kmer:13bp}--{B_:F}--{A_:F}--{ME:R}--{unknown}
39	0.129	{kmer:9bp}--{B_:F}--{A_:F}--{ME:R}--{unknown}
38	0.125	{kmer:4bp}--{A_:R}--{unknown}
38	0.125	{kmer:5bp}--{B_:F}--{unknown}
37	0.122	{unknown}--{ME:F}--{kmer:1bp}
35	0.115	{unknown}--{ME:F}
31	0.102	{kmer:9bp}--{A_:R}--{unknown}
31	0.102	{unknown}--{ME:F}--{kmer:8bp}
31	0.102	{kmer:2bp}--{ME:R}--{unknown}