Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.17" 2022-10-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /storage2/nyt/Projects/Juicer-Out/2022-11-07_BGI_Moscow/Maria_stat/t15 -s none -p /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.chrom.sizes -z /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10 Sequenced Read Pairs: 30,329 Normal Paired: 27,580 (90.94%) Chimeric Paired: 631 (2.08%) Chimeric Ambiguous: 147 (0.48%) Unmapped: 1,971 (6.50%) Ligation Motif Present: 0 (0.00%) Alignable (Normal+Chimeric Paired): 28,211 (93.02%) WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2022-11-18T17:04:13,790] [Globals.java:138] [main] Development mode is enabled Unique Reads: 28,068 (92.55%) PCR Duplicates: 143 (0.47%) Optical Duplicates: 0 (0.00%) Library Complexity Estimate: 2,773,317 Intra-fragment Reads: 0 (0.00% / 0.00%) Below MAPQ Threshold: 5,105 (16.83% / 18.19%) Hi-C Contacts: 22,963 (75.71% / 81.81%) Ligation Motif Present: 0 (0.00% / 0.00%) 3' Bias (Long Range): 0% - 0% Pair Type intra chrom %(L-I-O-R): 0% - 98% - 1% - 0% Pair Type inter chrom %(L-I-O-R): 26% - 24% - 24% - 26% DE: 85% Cis/all (FF and RR orient): 11.4% Inter-chromosomal: 2,967 (9.78% / 10.57%) Intra-chromosomal: 19,996 (65.93% / 71.24%) Short Range (<20,000bp): 19,704 (64.97% / 70.20%) Long Range (>20,000bp): 292 (0.96% / 1.04%)