FastContext Analysis Report

Run Data

R1	/storage2/nyt/Projects/Juicer-Out/2022-11-07_BGI_Moscow/Maria_stat/t2/fastq/t2_R1.fastq.gz
R2	/storage2/nyt/Projects/Juicer-Out/2022-11-07_BGI_Moscow/Maria_stat/t2/fastq/t2_R2.fastq.gz
Read Type	Paired-end
Max Reads	1,000,000
Rate Floor	0.001

Performance

Reads Analyzed	15,617
Threads	16
Started	2022-12-09T07:36:30.792493
Finished	2022-12-09T07:36:32.565006

Patterns

Patterns List

#	Pattern Name	Forward Strand	Reverse Strand	Length [bp]
1	A7	GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT	AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC	34
2	A5	ACACTCTTTCCCTACACGACGCTCTTCCGATCT	AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT	33
3	P5	AATGATACGGCGACCACCGAGATCTACAC	GTGTAGATCTCGGTGGTCGCCGTATCATT	29
4	P7	CAAGCAGAAGACGGCATACGAGAT	ATCTCGTATGCCGTCTTCTGCTTG	24
5	ME	CTGTCTCTTATACACATCT	AGATGTGTATAAGAGACAG	19
6	B_	CCGAGCCCACGAGAC	GTCTCGTGGGCTCGG	15
7	A_	TCGTCGGCAGCGTC	GACGCTGCCGACGA	14

Patterns Analysis

-	A7	A5	P5	P7	ME	B_	A_
A7	good	good	good	good	good	good	good
A5	-	good	good	good	good	good	good
P5	-	-	good	good	good	good	good
P7	-	-	-	good	good	good	good
ME	-	-	-	-	good	good	good
B_	-	-	-	-	-	good	good
A_	-	-	-	-	-	-	good

Other

Unrecognized Sequence	unknown
K-mer Max Size	15

Summary

R1

Count	Percentage	Read Structure
11,984	76.737	{unknown}
1,182	7.569	{B_:R}--{ME:R}--{unknown}
438	2.805	{unknown}--{ME:R}--{unknown}
421	2.696	{kmer:13bp}--{ME:R}--{unknown}
278	1.780	{unknown}--{B_:R}--{ME:R}--{unknown}
78	0.499	{B_:R}--{unknown}
65	0.416	{kmer:14bp}--{ME:R}--{unknown}
63	0.403	{kmer:10bp}--{ME:R}--{unknown}
42	0.269	{unknown}--{ME:F}--{unknown}
41	0.263	{kmer:5bp}--{B_:R}--{ME:R}--{unknown}
39	0.250	{kmer:3bp}--{B_:R}--{ME:R}--{unknown}
39	0.250	{kmer:6bp}--{B_:R}--{ME:R}--{unknown}
36	0.231	{unknown}--{B_:R}--{unknown}
32	0.205	{unknown}--{ME:F}--{A_:R}--{unknown}
29	0.186	{kmer:9bp}--{B_:R}--{ME:R}--{unknown}
28	0.179	{kmer:1bp}--{B_:R}--{ME:R}--{unknown}
27	0.173	{kmer:5bp}--{ME:R}--{unknown}
24	0.154	{kmer:11bp}--{ME:R}--{unknown}
24	0.154	{kmer:12bp}--{ME:R}--{unknown}
23	0.147	{kmer:7bp}--{B_:R}--{ME:R}--{unknown}
22	0.141	{unknown}--{A_:R}--{unknown}
20	0.128	{kmer:11bp}--{B_:R}--{ME:R}--{unknown}
18	0.115	{kmer:6bp}--{ME:R}--{unknown}
18	0.115	{kmer:8bp}--{B_:R}--{ME:R}--{unknown}
17	0.109	{kmer:4bp}--{B_:R}--{ME:R}--{unknown}
17	0.109	{unknown}--{A7:R}--{unknown}
17	0.109	{kmer:10bp}--{B_:R}--{ME:R}--{unknown}
17	0.109	{kmer:4bp}--{ME:R}--{unknown}
16	0.102	{kmer:12bp}--{B_:R}--{ME:R}--{unknown}
16	0.102	{kmer:7bp}--{ME:R}--{unknown}

R2

Count	Percentage	Read Structure
13,372	85.625	{unknown}
404	2.587	{kmer:13bp}--{ME:R}--{unknown}
350	2.241	{kmer:12bp}--{ME:R}--{unknown}
313	2.004	{A_:F}--{ME:R}--{unknown}
120	0.768	{kmer:10bp}--{ME:R}--{unknown}
95	0.608	{unknown}--{ME:F}--{unknown}
63	0.403	{unknown}--{B_:F}--{unknown}
55	0.352	{unknown}--{ME:F}--{B_:F}--{unknown}
53	0.339	{kmer:5bp}--{ME:R}--{unknown}
46	0.295	{kmer:9bp}--{ME:R}--{unknown}
35	0.224	{kmer:11bp}--{ME:R}--{unknown}
28	0.179	{kmer:7bp}--{ME:R}--{unknown}
26	0.166	{kmer:3bp}--{ME:R}--{unknown}
26	0.166	{kmer:14bp}--{ME:R}--{unknown}
24	0.154	{kmer:8bp}--{ME:R}--{unknown}
23	0.147	{unknown}--{ME:R}--{unknown}
22	0.141	{kmer:6bp}--{ME:R}--{unknown}
21	0.134	{ME:F}--{B_:F}--{unknown}
18	0.115	{unknown}--{A_:F}--{ME:R}--{unknown}
18	0.115	{kmer:4bp}--{ME:R}--{unknown}
16	0.102	{unknown}--{A_:R}--{unknown}