FastContext Analysis Report

Run Data

R1	/storage2/nyt/Projects/Juicer-Out/2022-11-07_BGI_Moscow/Maria_stat/t4/fastq/t4_R1.fastq.gz
R2	/storage2/nyt/Projects/Juicer-Out/2022-11-07_BGI_Moscow/Maria_stat/t4/fastq/t4_R2.fastq.gz
Read Type	Paired-end
Max Reads	1,000,000
Rate Floor	0.001

Performance

Reads Analyzed	16,309
Threads	16
Started	2022-12-09T07:36:32.913813
Finished	2022-12-09T07:36:34.742838

Patterns

Patterns List

#	Pattern Name	Forward Strand	Reverse Strand	Length [bp]
1	A7	GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT	AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC	34
2	A5	ACACTCTTTCCCTACACGACGCTCTTCCGATCT	AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT	33
3	P5	AATGATACGGCGACCACCGAGATCTACAC	GTGTAGATCTCGGTGGTCGCCGTATCATT	29
4	P7	CAAGCAGAAGACGGCATACGAGAT	ATCTCGTATGCCGTCTTCTGCTTG	24
5	ME	CTGTCTCTTATACACATCT	AGATGTGTATAAGAGACAG	19
6	B_	CCGAGCCCACGAGAC	GTCTCGTGGGCTCGG	15
7	A_	TCGTCGGCAGCGTC	GACGCTGCCGACGA	14

Patterns Analysis

-	A7	A5	P5	P7	ME	B_	A_
A7	good	good	good	good	good	good	good
A5	-	good	good	good	good	good	good
P5	-	-	good	good	good	good	good
P7	-	-	-	good	good	good	good
ME	-	-	-	-	good	good	good
B_	-	-	-	-	-	good	good
A_	-	-	-	-	-	-	good

Other

Unrecognized Sequence	unknown
K-mer Max Size	15

Summary

R1

Count	Percentage	Read Structure
9,746	59.758	{unknown}
3,118	19.118	{B_:R}--{ME:R}--{unknown}
838	5.138	{kmer:13bp}--{ME:R}--{unknown}
770	4.721	{unknown}--{ME:R}--{unknown}
182	1.116	{B_:R}--{unknown}
178	1.091	{kmer:14bp}--{ME:R}--{unknown}
156	0.957	{unknown}--{B_:R}--{ME:R}--{unknown}
136	0.834	{kmer:10bp}--{ME:R}--{unknown}
64	0.392	{kmer:12bp}--{ME:R}--{unknown}
41	0.251	{kmer:5bp}--{ME:R}--{unknown}
40	0.245	{kmer:7bp}--{ME:R}--{unknown}
38	0.233	{kmer:11bp}--{ME:R}--{unknown}
37	0.227	{kmer:6bp}--{ME:R}--{unknown}
34	0.208	{unknown}--{ME:F}--{unknown}
34	0.208	{unknown}--{ME:F}--{A_:R}--{unknown}
31	0.190	{unknown}--{B_:R}--{unknown}
30	0.184	{kmer:5bp}--{B_:R}--{ME:R}--{unknown}
30	0.184	{kmer:6bp}--{B_:R}--{ME:R}--{unknown}
30	0.184	{kmer:9bp}--{ME:R}--{unknown}
29	0.178	{kmer:3bp}--{ME:R}--{unknown}
28	0.172	{kmer:3bp}--{B_:R}--{ME:R}--{unknown}
27	0.166	{kmer:8bp}--{ME:R}--{unknown}
24	0.147	{kmer:1bp}--{B_:R}--{ME:R}--{unknown}
23	0.141	{unknown}--{A_:R}--{unknown}
22	0.135	{kmer:4bp}--{ME:R}--{unknown}
18	0.110	{kmer:4bp}--{B_:R}--{ME:R}--{unknown}
17	0.104	{kmer:8bp}--{B_:R}--{ME:R}--{unknown}
17	0.104	{kmer:11bp}--{B_:R}--{ME:R}--{unknown}

R2

Count	Percentage	Read Structure
12,896	79.073	{unknown}
461	2.827	{kmer:13bp}--{ME:R}--{unknown}
279	1.711	{kmer:12bp}--{ME:R}--{unknown}
238	1.459	{A_:F}--{ME:R}--{unknown}
163	0.999	{unknown}--{B_:F}--{unknown}
134	0.822	{unknown}--{ME:F}--{unknown}
110	0.674	{unknown}--{ME:F}--{B_:F}--{unknown}
101	0.619	{kmer:10bp}--{ME:R}--{unknown}
77	0.472	{unknown}--{A_:F}--{ME:R}--{unknown}
65	0.399	{unknown}--{ME:R}--{unknown}
61	0.374	{kmer:13bp}--{B_:F}--{unknown}
59	0.362	{kmer:5bp}--{B_:F}--{unknown}
46	0.282	{kmer:9bp}--{ME:R}--{unknown}
45	0.276	{ME:F}--{B_:F}--{unknown}
45	0.276	{unknown}--{A_:R}--{unknown}
38	0.233	{kmer:5bp}--{ME:R}--{unknown}
33	0.202	{kmer:7bp}--{B_:F}--{unknown}
32	0.196	{unknown}--{B_:F}--{A_:F}--{ME:R}--{unknown}
31	0.190	{kmer:6bp}--{ME:R}--{unknown}
31	0.190	{kmer:9bp}--{B_:F}--{unknown}
29	0.178	{kmer:4bp}--{B_:F}--{unknown}
28	0.172	{kmer:3bp}--{B_:F}--{unknown}
28	0.172	{kmer:2bp}--{B_:F}--{unknown}
28	0.172	{kmer:7bp}--{ME:R}--{unknown}
28	0.172	{kmer:3bp}--{ME:R}--{unknown}
27	0.166	{unknown}--{A_:F}--{unknown}
26	0.159	{kmer:11bp}--{ME:R}--{unknown}
24	0.147	{kmer:8bp}--{ME:R}--{unknown}
21	0.129	{kmer:10bp}--{B_:F}--{unknown}
20	0.123	{kmer:14bp}--{ME:R}--{unknown}
19	0.117	{kmer:4bp}--{ME:R}--{unknown}
19	0.117	{kmer:7bp}--{ME:F}--{B_:F}--{unknown}
18	0.110	{kmer:5bp}--{B_:F}--{A_:F}--{ME:R}--{unknown}
17	0.104	{kmer:11bp}--{B_:F}--{unknown}