Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.17" 2022-10-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /storage2/nyt/Projects/Juicer-Out/2022-11-07_BGI_Moscow/Maria_stat/t4 -s none -p /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.chrom.sizes -z /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10 Sequenced Read Pairs: 16,309 Normal Paired: 14,576 (89.37%) Chimeric Paired: 1,056 (6.47%) Chimeric Ambiguous: 193 (1.18%) Unmapped: 484 (2.97%) Ligation Motif Present: 0 (0.00%) Alignable (Normal+Chimeric Paired): 15,632 (95.85%) WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2022-11-18T17:06:50,324] [Globals.java:138] [main] Development mode is enabled Unique Reads: 15,547 (95.33%) PCR Duplicates: 85 (0.52%) Optical Duplicates: 0 (0.00%) Library Complexity Estimate: 1,432,192 Intra-fragment Reads: 0 (0.00% / 0.00%) Below MAPQ Threshold: 1,689 (10.36% / 10.86%) Hi-C Contacts: 13,858 (84.97% / 89.14%) Ligation Motif Present: 0 (0.00% / 0.00%) 3' Bias (Long Range): 0% - 0% Pair Type intra chrom %(L-I-O-R): 1% - 97% - 1% - 1% Pair Type inter chrom %(L-I-O-R): 25% - 24% - 25% - 26% DE: 86% Cis/all (FF and RR orient): 23.8% Inter-chromosomal: 1,460 (8.95% / 9.39%) Intra-chromosomal: 12,398 (76.02% / 79.75%) Short Range (<20,000bp): 12,121 (74.32% / 77.96%) Long Range (>20,000bp): 277 (1.70% / 1.78%)