FastContext Analysis Report

Run Data

R1/storage2/nyt/Projects/Juicer-Out/2022-11-07_BGI_Moscow/Maria_stat/t5/fastq/t5_R1.fastq.gz
R2/storage2/nyt/Projects/Juicer-Out/2022-11-07_BGI_Moscow/Maria_stat/t5/fastq/t5_R2.fastq.gz
Read TypePaired-end
Max Reads1,000,000
Rate Floor0.001

Performance

Reads Analyzed32,279
Threads16
Started2022-12-09T07:36:35.171938
Finished2022-12-09T07:36:38.874988

Patterns

Patterns List

#Pattern NameForward StrandReverse StrandLength [bp]
1A7GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTAGATCGGAAGAGCACACGTCTGAACTCCAGTCAC34
2A5ACACTCTTTCCCTACACGACGCTCTTCCGATCTAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT33
3P5AATGATACGGCGACCACCGAGATCTACACGTGTAGATCTCGGTGGTCGCCGTATCATT29
4P7CAAGCAGAAGACGGCATACGAGATATCTCGTATGCCGTCTTCTGCTTG24
5MECTGTCTCTTATACACATCTAGATGTGTATAAGAGACAG19
6B_CCGAGCCCACGAGACGTCTCGTGGGCTCGG15
7A_TCGTCGGCAGCGTCGACGCTGCCGACGA14

Patterns Analysis

-A7A5P5P7MEB_A_
A7goodgoodgoodgoodgoodgoodgood
A5-goodgoodgoodgoodgoodgood
P5--goodgoodgoodgoodgood
P7---goodgoodgoodgood
ME----goodgoodgood
B_-----goodgood
A_------good

Other

Unrecognized Sequenceunknown
K-mer Max Size15

Summary

R1

CountPercentageRead Structure
24,23875.089{unknown}
2,6728.278{B_:R}--{ME:R}--{unknown}
9873.058{unknown}--{ME:R}--{unknown}
6441.995{unknown}--{B_:R}--{ME:R}--{unknown}
5541.716{kmer:13bp}--{ME:R}--{unknown}
1940.601{kmer:14bp}--{ME:R}--{unknown}
1690.524{kmer:10bp}--{ME:R}--{unknown}
1500.465{unknown}--{ME:F}--{unknown}
1340.415{B_:R}--{unknown}
1060.328{unknown}--{ME:F}--{A_:R}--{unknown}
950.294{kmer:3bp}--{B_:R}--{ME:R}--{unknown}
850.263{kmer:5bp}--{B_:R}--{ME:R}--{unknown}
840.260{unknown}--{B_:R}--{unknown}
810.251{kmer:6bp}--{B_:R}--{ME:R}--{unknown}
710.220{kmer:5bp}--{ME:R}--{unknown}
600.186{kmer:9bp}--{B_:R}--{ME:R}--{unknown}
590.183{kmer:1bp}--{B_:R}--{ME:R}--{unknown}
530.164{kmer:7bp}--{B_:R}--{ME:R}--{unknown}
480.149{kmer:7bp}--{ME:R}--{unknown}
470.146{kmer:10bp}--{B_:R}--{ME:R}--{unknown}
470.146{kmer:4bp}--{B_:R}--{ME:R}--{unknown}
460.143{kmer:11bp}--{B_:R}--{ME:R}--{unknown}
420.130{kmer:11bp}--{ME:R}--{unknown}
410.127{unknown}--{A_:R}--{unknown}
400.124{kmer:13bp}--{B_:R}--{ME:R}--{unknown}
400.124{kmer:6bp}--{ME:R}--{unknown}
390.121{kmer:12bp}--{ME:R}--{unknown}
390.121{kmer:9bp}--{ME:R}--{unknown}
390.121{kmer:8bp}--{B_:R}--{ME:R}--{unknown}
360.112{kmer:12bp}--{B_:R}--{ME:R}--{unknown}
330.102{kmer:8bp}--{ME:R}--{unknown}

R2

CountPercentageRead Structure
27,41684.934{unknown}
8212.543{kmer:12bp}--{ME:R}--{unknown}
7692.382{kmer:13bp}--{ME:R}--{unknown}
3831.187{A_:F}--{ME:R}--{unknown}
3271.013{kmer:10bp}--{ME:R}--{unknown}
1920.595{kmer:9bp}--{ME:R}--{unknown}
1870.579{unknown}--{ME:F}--{unknown}
1840.570{unknown}--{ME:F}--{B_:F}--{unknown}
1240.384{kmer:5bp}--{ME:R}--{unknown}
1150.356{unknown}--{B_:F}--{unknown}
870.270{kmer:7bp}--{ME:R}--{unknown}
780.242{kmer:3bp}--{ME:R}--{unknown}
650.201{kmer:6bp}--{ME:R}--{unknown}
600.186{kmer:8bp}--{ME:R}--{unknown}
570.177{unknown}--{A_:F}--{ME:R}--{unknown}
540.167{unknown}--{ME:R}--{unknown}
530.164{kmer:11bp}--{ME:R}--{unknown}
490.152{kmer:4bp}--{ME:R}--{unknown}
350.108{kmer:14bp}--{ME:R}--{unknown}