FastContext Analysis Report

Run Data

R1	/storage2/nyt/Projects/Juicer-Out/2022-11-07_BGI_Moscow/Maria_stat/t7/fastq/t7_R1.fastq.gz
R2	/storage2/nyt/Projects/Juicer-Out/2022-11-07_BGI_Moscow/Maria_stat/t7/fastq/t7_R2.fastq.gz
Read Type	Paired-end
Max Reads	1,000,000
Rate Floor	0.001

Performance

Reads Analyzed	23,935
Threads	16
Started	2022-12-09T07:36:39.233896
Finished	2022-12-09T07:36:41.941452

Patterns

Patterns List

#	Pattern Name	Forward Strand	Reverse Strand	Length [bp]
1	A7	GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT	AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC	34
2	A5	ACACTCTTTCCCTACACGACGCTCTTCCGATCT	AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT	33
3	P5	AATGATACGGCGACCACCGAGATCTACAC	GTGTAGATCTCGGTGGTCGCCGTATCATT	29
4	P7	CAAGCAGAAGACGGCATACGAGAT	ATCTCGTATGCCGTCTTCTGCTTG	24
5	ME	CTGTCTCTTATACACATCT	AGATGTGTATAAGAGACAG	19
6	B_	CCGAGCCCACGAGAC	GTCTCGTGGGCTCGG	15
7	A_	TCGTCGGCAGCGTC	GACGCTGCCGACGA	14

Patterns Analysis

-	A7	A5	P5	P7	ME	B_	A_
A7	good	good	good	good	good	good	good
A5	-	good	good	good	good	good	good
P5	-	-	good	good	good	good	good
P7	-	-	-	good	good	good	good
ME	-	-	-	-	good	good	good
B_	-	-	-	-	-	good	good
A_	-	-	-	-	-	-	good

Other

Unrecognized Sequence	unknown
K-mer Max Size	15

Summary

R1

Count	Percentage	Read Structure
16,463	68.782	{unknown}
2,055	8.586	{B_:R}--{ME:R}--{unknown}
1,038	4.337	{kmer:13bp}--{ME:R}--{unknown}
885	3.698	{unknown}--{ME:R}--{unknown}
442	1.847	{unknown}--{B_:R}--{ME:R}--{unknown}
163	0.681	{kmer:10bp}--{ME:R}--{unknown}
125	0.522	{B_:R}--{unknown}
123	0.514	{kmer:14bp}--{ME:R}--{unknown}
114	0.476	{unknown}--{ME:F}--{unknown}
100	0.418	{kmer:5bp}--{B_:R}--{ME:R}--{unknown}
94	0.393	{unknown}--{ME:F}--{A_:R}--{unknown}
89	0.372	{kmer:3bp}--{B_:R}--{ME:R}--{unknown}
88	0.368	{kmer:5bp}--{ME:R}--{unknown}
84	0.351	{kmer:12bp}--{ME:R}--{unknown}
78	0.326	{kmer:7bp}--{ME:R}--{unknown}
67	0.280	{kmer:7bp}--{B_:R}--{ME:R}--{unknown}
66	0.276	{kmer:6bp}--{B_:R}--{ME:R}--{unknown}
63	0.263	{unknown}--{B_:R}--{unknown}
60	0.251	{kmer:11bp}--{ME:R}--{unknown}
57	0.238	{kmer:1bp}--{B_:R}--{ME:R}--{unknown}
57	0.238	{kmer:11bp}--{B_:R}--{ME:R}--{unknown}
52	0.217	{kmer:8bp}--{B_:R}--{ME:R}--{unknown}
47	0.196	{kmer:4bp}--{B_:R}--{ME:R}--{unknown}
44	0.184	{kmer:6bp}--{ME:R}--{unknown}
42	0.175	{unknown}--{A_:R}--{unknown}
40	0.167	{kmer:4bp}--{ME:R}--{unknown}
40	0.167	{kmer:3bp}--{ME:R}--{unknown}
39	0.163	{kmer:8bp}--{ME:R}--{unknown}
38	0.159	{kmer:10bp}--{B_:R}--{ME:R}--{unknown}
37	0.155	{kmer:9bp}--{B_:R}--{ME:R}--{unknown}
35	0.146	{kmer:12bp}--{B_:R}--{ME:R}--{unknown}
33	0.138	{kmer:13bp}--{B_:R}--{ME:R}--{unknown}
32	0.134	{kmer:9bp}--{ME:R}--{unknown}
29	0.121	{kmer:14bp}--{B_:R}--{ME:R}--{unknown}
29	0.121	{kmer:2bp}--{B_:R}--{ME:R}--{unknown}

R2

Count	Percentage	Read Structure
18,045	75.392	{unknown}
1,133	4.734	{kmer:13bp}--{ME:R}--{unknown}
953	3.982	{A_:F}--{ME:R}--{unknown}
834	3.484	{kmer:12bp}--{ME:R}--{unknown}
339	1.416	{kmer:10bp}--{ME:R}--{unknown}
186	0.777	{unknown}--{ME:F}--{unknown}
165	0.689	{kmer:9bp}--{ME:R}--{unknown}
138	0.577	{unknown}--{ME:F}--{B_:F}--{unknown}
126	0.526	{unknown}--{B_:F}--{unknown}
121	0.506	{kmer:5bp}--{ME:R}--{unknown}
93	0.389	{kmer:14bp}--{ME:R}--{unknown}
79	0.330	{kmer:7bp}--{ME:R}--{unknown}
77	0.322	{kmer:6bp}--{ME:R}--{unknown}
75	0.313	{kmer:11bp}--{ME:R}--{unknown}
68	0.284	{kmer:3bp}--{ME:R}--{unknown}
66	0.276	{kmer:8bp}--{ME:R}--{unknown}
61	0.255	{kmer:4bp}--{ME:R}--{unknown}
57	0.238	{unknown}--{A_:F}--{ME:R}--{unknown}
51	0.213	{unknown}--{ME:R}--{unknown}
39	0.163	{kmer:1bp}--{ME:R}--{unknown}
38	0.159	{ME:F}--{B_:F}--{unknown}
35	0.146	{kmer:5bp}--{B_:F}--{unknown}
31	0.130	{kmer:7bp}--{B_:F}--{unknown}
29	0.121	{unknown}--{A_:F}--{unknown}
29	0.121	{kmer:9bp}--{B_:F}--{unknown}
28	0.117	{kmer:13bp}--{B_:F}--{unknown}
24	0.100	{kmer:2bp}--{B_:F}--{unknown}