Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.17" 2022-10-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /storage2/nyt/Projects/Juicer-Out/2022-11-07_BGI_Moscow/Maria_stat/t7 -s none -p /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.chrom.sizes -z /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10 Sequenced Read Pairs: 23,935 Normal Paired: 21,592 (90.21%) Chimeric Paired: 1,485 (6.20%) Chimeric Ambiguous: 261 (1.09%) Unmapped: 597 (2.49%) Ligation Motif Present: 0 (0.00%) Alignable (Normal+Chimeric Paired): 23,077 (96.42%) WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2022-11-18T17:07:48,120] [Globals.java:138] [main] Development mode is enabled Unique Reads: 22,975 (95.99%) PCR Duplicates: 102 (0.43%) Optical Duplicates: 0 (0.00%) Library Complexity Estimate: 2,602,831 Intra-fragment Reads: 0 (0.00% / 0.00%) Below MAPQ Threshold: 2,610 (10.90% / 11.36%) Hi-C Contacts: 20,365 (85.08% / 88.64%) Ligation Motif Present: 0 (0.00% / 0.00%) 3' Bias (Long Range): 0% - 0% Pair Type intra chrom %(L-I-O-R): 1% - 98% - 1% - 1% Pair Type inter chrom %(L-I-O-R): 24% - 25% - 24% - 26% DE: 84% Cis/all (FF and RR orient): 16.2% Inter-chromosomal: 2,776 (11.60% / 12.08%) Intra-chromosomal: 17,589 (73.49% / 76.56%) Short Range (<20,000bp): 17,210 (71.90% / 74.91%) Long Range (>20,000bp): 379 (1.58% / 1.65%)