Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.17" 2022-10-18; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /storage2/nyt/Projects/Juicer-Out/2022-11-07_BGI_Moscow/Maria_stat/t8 -s none -p /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.chrom.sizes -z /storage2/dreamworld/Databases/hg19_canonical/hg19_canonical.fa -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10 Sequenced Read Pairs: 23,994 Normal Paired: 20,941 (87.28%) Chimeric Paired: 1,977 (8.24%) Chimeric Ambiguous: 338 (1.41%) Unmapped: 738 (3.08%) Ligation Motif Present: 0 (0.00%) Alignable (Normal+Chimeric Paired): 22,918 (95.52%) WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2022-11-18T17:08:16,484] [Globals.java:138] [main] Development mode is enabled Unique Reads: 22,822 (95.12%) PCR Duplicates: 96 (0.40%) Optical Duplicates: 0 (0.00%) Library Complexity Estimate: 2,727,952 Intra-fragment Reads: 0 (0.00% / 0.00%) Below MAPQ Threshold: 4,602 (19.18% / 20.16%) Hi-C Contacts: 18,220 (75.94% / 79.84%) Ligation Motif Present: 0 (0.00% / 0.00%) 3' Bias (Long Range): 0% - 0% Pair Type intra chrom %(L-I-O-R): 1% - 97% - 1% - 1% Pair Type inter chrom %(L-I-O-R): 27% - 27% - 24% - 23% DE: 84% Cis/all (FF and RR orient): 21.7% Inter-chromosomal: 2,290 (9.54% / 10.03%) Intra-chromosomal: 15,930 (66.39% / 69.80%) Short Range (<20,000bp): 15,625 (65.12% / 68.46%) Long Range (>20,000bp): 305 (1.27% / 1.34%)