Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/Ano/Agam -p /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/AcolNg_VARYA/AcolNg_V3.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/AcolNg_VARYA/AcolNg_V3.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/AcolNg_VARYA/AcolNg_V3.fa -o /mnt/storage/home/manuriddinov/scratch/Anopheles_out/AgamNg -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  173,627,020
 Normal Paired: 135,024,430 (77.77%)
 Chimeric Paired: 4,402,104 (2.54%)
 Chimeric Ambiguous: 3,389,162 (1.95%)
 Unmapped: 30,811,324 (17.75%)
 Ligation Motif Present: 662,162 (0.38%)
Alignable (Normal+Chimeric Paired): 139,426,534 (80.30%)
Unique Reads: 80,927,572 (46.61%)
PCR Duplicates: 57,569,210 (33.16%)
Optical Duplicates: 929,752 (0.54%)
Library Complexity Estimate: 116,234,654
Intra-fragment Reads: 23,990,605 (13.82% / 29.64%)
Below MAPQ Threshold: 17,252,458 (9.94% / 21.32%)
Hi-C Contacts: 39,684,509 (22.86% / 49.04%)
 Ligation Motif Present: 222,217  (0.13% / 0.27%)
 3' Bias (Long Range): 55% - 45%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 1,851,855  (1.07% / 2.29%)
Intra-chromosomal: 37,832,654  (21.79% / 46.75%)
Short Range (<20Kb): 35,752,871  (20.59% / 44.18%)
Long Range (>20Kb): 2,079,776  (1.20% / 2.57%)