Experiment description: Juicer version 1.5.6;6 threads; java version "1.8.0_45"; /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU/juicer.sh -t 6 -d /mnt/storage/home/manuriddinov/scratch/fastq/Ano/AmerR4A -p /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/AmerR4_VARYA/AmerR4_V3.chr.sizes -y /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/AmerR4_VARYA/AmerR4_V3.MboI.juicer.txt -z /mnt/storage/home/manuriddinov/MyData/Anopheles/genome/chr/AmerR4_VARYA/AmerR4_V3.fa -o /mnt/storage/home/manuriddinov/scratch/Anopheles_out/AmerR4_V3A -D /mnt/storage/home/manuriddinov/Distributive/juicer-master/CPU                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  129,643,770
 Normal Paired: 53,633,888 (41.37%)
 Chimeric Paired: 35,098,033 (27.07%)
 Chimeric Ambiguous: 11,669,594 (9.00%)
 Unmapped: 29,242,255 (22.56%)
 Ligation Motif Present: 82,596,867 (63.71%)
Alignable (Normal+Chimeric Paired): 88,731,921 (68.44%)
Unique Reads: 77,378,111 (59.69%)
PCR Duplicates: 11,321,247 (8.73%)
Optical Duplicates: 32,563 (0.03%)
Library Complexity Estimate: 317,227,251
Intra-fragment Reads: 3,064,053 (2.36% / 3.96%)
Below MAPQ Threshold: 13,486,099 (10.40% / 17.43%)
Hi-C Contacts: 60,827,959 (46.92% / 78.61%)
 Ligation Motif Present: 26,857,406  (20.72% / 34.71%)
 3' Bias (Long Range): 50% - 50%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 6,271,799  (4.84% / 8.11%)
Intra-chromosomal: 54,556,160  (42.08% / 70.51%)
Short Range (<20Kb): 16,853,473  (13.00% / 21.78%)
Long Range (>20Kb): 37,702,602  (29.08% / 48.73%)