cutadapt -e 0 -g CAGATC -j 16 --action=none -o untrimmed_0_mismatch_SC2_R1_001.fastq.gz -p untrimmed_0_mismatch_SC2_R2_001.fastq.gz Undetermined_S0_R1_001.fastq.gz Undetermined_S0_R2_001.fastq.gz This is cutadapt 2.6 with Python 3.7.16 Command line parameters: -e 0 -g CAGATC -j 16 --action=none -o untrimmed_0_mismatch_SC2_R1_001.fastq.gz -p untrimmed_0_mismatch_SC2_R2_001.fastq.gz Undetermined_S0_R1_001.fastq.gz Undetermined_S0_R2_001.fastq.gz Processing reads on 16 cores in paired-end mode ... [---=8 ] 02:30:47 533,660,953 reads @ 17.0 µs/read; 3.54 M reads/minute Finished in 9047.72 s (17 us/read; 3.54 M reads/minute). === Summary === Total read pairs processed: 533,660,953 Read 1 with adapter: 46,348,170 (8.7%) Read 2 with adapter: 0 (0.0%) Pairs written (passing filters): 533,660,953 (100.0%) Total basepairs processed: 159,570,593,183 bp Read 1: 79,900,650,894 bp Read 2: 79,669,942,289 bp Total written (filtered): 159,570,593,183 bp (100.0%) Read 1: 79,900,650,894 bp Read 2: 79,669,942,289 bp === First read: Adapter 1 === Sequence: CAGATC; Type: regular 5'; Length: 6; Trimmed: 46348170 times. No. of allowed errors: 0-6 bp: 0 Overview of removed sequences length count expect max.err error counts 3 14269517 8338452.4 0 14269517 4 24665825 2084613.1 0 24665825 5 130803 521153.3 0 130803 6 50288 130288.3 0 50288 7 27766 130288.3 0 27766 8 85476 130288.3 0 85476 9 41729 130288.3 0 41729 10 38185 130288.3 0 38185 11 24817 130288.3 0 24817 12 32442 130288.3 0 32442 13 28493 130288.3 0 28493 14 35942 130288.3 0 35942 15 29806 130288.3 0 29806 16 30502 130288.3 0 30502 17 31475 130288.3 0 31475 18 31895 130288.3 0 31895 19 31096 130288.3 0 31096 20 30530 130288.3 0 30530 21 30012 130288.3 0 30012 22 33984 130288.3 0 33984 23 32242 130288.3 0 32242 24 34326 130288.3 0 34326 25 32842 130288.3 0 32842 26 30888 130288.3 0 30888 27 32805 130288.3 0 32805 28 43398 130288.3 0 43398 29 31534 130288.3 0 31534 30 33420 130288.3 0 33420 31 32274 130288.3 0 32274 32 30262 130288.3 0 30262 33 31765 130288.3 0 31765 34 33986 130288.3 0 33986 35 40271 130288.3 0 40271 36 34411 130288.3 0 34411 37 36227 130288.3 0 36227 38 32076 130288.3 0 32076 39 32863 130288.3 0 32863 40 35623 130288.3 0 35623 41 37566 130288.3 0 37566 42 35487 130288.3 0 35487 43 36127 130288.3 0 36127 44 35269 130288.3 0 35269 45 40676 130288.3 0 40676 46 38533 130288.3 0 38533 47 35736 130288.3 0 35736 48 37697 130288.3 0 37697 49 37736 130288.3 0 37736 50 37575 130288.3 0 37575 51 38962 130288.3 0 38962 52 36422 130288.3 0 36422 53 37498 130288.3 0 37498 54 37313 130288.3 0 37313 55 43512 130288.3 0 43512 56 36865 130288.3 0 36865 57 39173 130288.3 0 39173 58 40955 130288.3 0 40955 59 38789 130288.3 0 38789 60 39481 130288.3 0 39481 61 38991 130288.3 0 38991 62 39395 130288.3 0 39395 63 40898 130288.3 0 40898 64 41630 130288.3 0 41630 65 39441 130288.3 0 39441 66 42109 130288.3 0 42109 67 42358 130288.3 0 42358 68 40462 130288.3 0 40462 69 42070 130288.3 0 42070 70 42335 130288.3 0 42335 71 41466 130288.3 0 41466 72 42960 130288.3 0 42960 73 43848 130288.3 0 43848 74 40982 130288.3 0 40982 75 43928 130288.3 0 43928 76 43377 130288.3 0 43377 77 42437 130288.3 0 42437 78 47264 130288.3 0 47264 79 43852 130288.3 0 43852 80 42013 130288.3 0 42013 81 43180 130288.3 0 43180 82 45859 130288.3 0 45859 83 43807 130288.3 0 43807 84 45310 130288.3 0 45310 85 47284 130288.3 0 47284 86 46309 130288.3 0 46309 87 47113 130288.3 0 47113 88 50658 130288.3 0 50658 89 46365 130288.3 0 46365 90 46058 130288.3 0 46058 91 47188 130288.3 0 47188 92 46106 130288.3 0 46106 93 47528 130288.3 0 47528 94 47591 130288.3 0 47591 95 47128 130288.3 0 47128 96 48902 130288.3 0 48902 97 50308 130288.3 0 50308 98 65820 130288.3 0 65820 99 820307 130288.3 0 820307 100 52071 130288.3 0 52071 101 48838 130288.3 0 48838 102 50438 130288.3 0 50438 103 50835 130288.3 0 50835 104 50284 130288.3 0 50284 105 51289 130288.3 0 51289 106 50983 130288.3 0 50983 107 50371 130288.3 0 50371 108 53298 130288.3 0 53298 109 53830 130288.3 0 53830 110 52342 130288.3 0 52342 111 53239 130288.3 0 53239 112 54210 130288.3 0 54210 113 55356 130288.3 0 55356 114 54978 130288.3 0 54978 115 56297 130288.3 0 56297 116 56275 130288.3 0 56275 117 57630 130288.3 0 57630 118 57819 130288.3 0 57819 119 56607 130288.3 0 56607 120 58353 130288.3 0 58353 121 59604 130288.3 0 59604 122 57957 130288.3 0 57957 123 59296 130288.3 0 59296 124 58338 130288.3 0 58338 125 59450 130288.3 0 59450 126 61589 130288.3 0 61589 127 61459 130288.3 0 61459 128 60914 130288.3 0 60914 129 61732 130288.3 0 61732 130 63868 130288.3 0 63868 131 62407 130288.3 0 62407 132 62415 130288.3 0 62415 133 63733 130288.3 0 63733 134 64954 130288.3 0 64954 135 64690 130288.3 0 64690 136 65605 130288.3 0 65605 137 65977 130288.3 0 65977 138 65827 130288.3 0 65827 139 66705 130288.3 0 66705 140 66983 130288.3 0 66983 141 69882 130288.3 0 69882 142 39718 130288.3 0 39718 143 42126 130288.3 0 42126 144 36237 130288.3 0 36237 145 35874 130288.3 0 35874 146 37682 130288.3 0 37682 147 40895 130288.3 0 40895 148 39020 130288.3 0 39020 149 35633 130288.3 0 35633 150 14452 130288.3 0 14452