Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.18" 2023-01-17; /storage2/dreamworld/Tools/juicer1.6_compact/scripts/juicer.sh -g hg19 -d /storage/nyt/Projects/Juicer-Out/2023-04-11_Hic_Sci/HiC-Sc-2 -s DpnII -y /storage/nyt/Data/Genomes/Sciara/juicer.rs/sciara_merged_Prim_on_Gerbi_soft_WG.rawchrom.assembly_DpnII.txt -p /storage/nyt/Data/Genomes/Sciara/sciara_merged_Prim_on_Gerbi_soft_WG.rawchrom.assembly.chromsizes -z /storage/nyt/Data/Genomes/Sciara/sciara_merged_Prim_on_Gerbi_soft_WG.rawchrom.assembly.fasta -D /storage2/dreamworld/Tools/juicer1.6_compact -t 10                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  11,213
 Normal Paired: 2,966 (26.45%)
 Chimeric Paired: 4,321 (38.54%)
 Chimeric Ambiguous: 2,329 (20.77%)
 Unmapped: 1,597 (14.24%)
 Ligation Motif Present: 8,235 (73.44%)
Alignable (Normal+Chimeric Paired): 7,287 (64.99%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2023-04-11T19:18:45,320]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 7,286 (64.98%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 1 (0.01%)
Library Complexity Estimate: 0
Intra-fragment Reads: 320 (2.85% / 4.39%)
Below MAPQ Threshold: 2,099 (18.72% / 28.81%)
Hi-C Contacts: 4,867 (43.40% / 66.80%)
 Ligation Motif Present: 3,815  (34.02% / 52.36%)
 3' Bias (Long Range): 60% - 40%
 Pair Type intra chrom %(L-I-O-R): 18% - 48% - 17% - 17%
 Pair Type inter chrom %(L-I-O-R): 24% - 25% - 24% - 26%
 DE: 25%
 Cis/all (FF and RR orient): 76.6%
Inter-chromosomal: 853  (7.61% / 11.71%)
Intra-chromosomal: 4,014  (35.80% / 55.09%)
Short Range (<20,000bp): 1,711  (15.26% / 23.48%)
Long Range (>20,000bp): 2,303  (20.54% / 31.61%)